
PFRMAT AL
TARGET T0113
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1fmc_A
M    1 M 1
A    2 F 2
A    3 N 3
A    4 S 4
V    5 D 5
R    6 N 6
S    7 R 8
V    8 L 9
K    9 D 10
G   10 G 11
L   11 K 12
V   12 C 13
A   13 A 14
V   14 I 15
I   15 I 16
T   16 T 17
G   17 G 18
G   18 A 19
A   19 G 20
S   20 A 21
G   21 G 22
L   22 I 23
G   23 G 24
L   24 K 25
S   25 E 26
T   26 I 27
A   27 A 28
K   28 I 29
R   29 T 30
L   30 F 31
V   31 A 32
G   32 T 33
Q   33 A 34
G   34 G 35
A   35 A 36
T   36 S 37
A   37 V 38
V   38 V 39
L   39 V 40
L   40 S 41
D   41 D 42
V   42 I 43
P   43 N 44
N   44 A 45
S   45 D 46
E   46 A 47
G   47 A 48
E   48 N 49
T   49 D 53
E   50 E 54
A   51 I 55
K   52 Q 56
K   53 Q 57
L   54 L 58
G   55 G 59
G   56 G 60
N   57 Q 61
C   58 A 62
I   59 F 63
F   60 A 64
A   61 C 65
P   62 R 66
A   63 C 67
N   64 D 68
V   65 I 69
T   66 T 70
S   67 S 71
E   68 E 72
K   69 Q 73
E   70 E 74
V   71 L 75
Q   72 S 76
A   73 A 77
A   74 L 78
L   75 A 79
T   76 D 80
L   77 F 81
A   78 A 82
K   79 I 83
E   80 S 84
K   81 K 85
F   82 L 86
G   83 G 87
R   84 K 88
I   85 V 89
D   86 D 90
V   87 I 91
A   88 L 92
V   89 V 93
N   90 N 94
C   91 N 95
A   92 A 96
G   93 G 97
I   94 G 98
A   95 G 99
V   96 G 100
A   97 P 101
I   98 K 102
K   99 P 103
Q  107 F 104
V  108 D 105
H  109 M 106
T  110 P 107
L  111 M 108
E  112 A 109
D  113 D 110
F  114 F 111
Q  115 R 112
R  116 R 113
V  117 A 114
I  118 Y 115
N  119 E 116
V  120 L 117
N  121 N 118
L  122 V 119
I  123 F 120
G  124 S 121
T  125 F 122
F  126 F 123
N  127 H 124
V  128 L 125
I  129 S 126
R  130 Q 127
L  131 L 128
V  132 V 129
A  133 A 130
G  134 P 131
V  135 E 132
M  136 M 133
G  137 E 134
Q  138 K 135
N  139 N 136
E  140 G 137
R  147 G 138
G  148 G 139
V  149 V 140
I  150 I 141
I  151 L 142
N  152 T 143
T  153 I 144
A  154 T 145
S  155 S 146
V  156 M 147
A  157 A 148
A  158 A 149
F  159 E 150
E  160 N 151
G  161 K 152
Q  162 N 153
V  163 I 154
G  164 N 155
Q  165 M 156
A  166 T 157
A  167 S 158
Y  168 Y 159
S  169 A 160
A  170 S 161
S  171 S 162
K  172 K 163
G  173 A 164
G  174 A 165
I  175 A 166
V  176 S 167
G  177 H 168
M  178 L 169
T  179 V 170
L  180 R 171
P  181 N 172
I  182 M 173
A  183 A 174
R  184 F 175
D  185 D 176
L  186 L 177
A  187 G 178
P  188 E 179
I  189 K 180
G  190 N 181
I  191 I 182
R  192 R 183
V  193 V 184
V  194 N 185
T  195 G 186
I  196 I 187
A  197 A 188
P  198 P 189
G  199 G 190
L  200 A 191
F  201 I 192
A  202 L 193
T  203 T 194
P  204 D 195
L  205 A 196
L  206 L 197
T  207 K 198
T  208 V 200
L  209 I 201
P  210 T 202
D  211 P 203
K  212 E 204
V  213 I 205
R  214 E 206
N  215 Q 207
F  216 K 208
L  217 M 209
A  218 L 210
S  219 Q 211
Q  220 H 212
V  221 T 213
P  222 P 214
P  224 I 215
S  225 R 216
R  226 R 217
L  227 L 218
G  228 G 219
D  229 Q 220
P  230 P 221
A  231 Q 222
E  232 D 223
Y  233 I 224
A  234 A 225
H  235 N 226
L  236 A 227
V  237 A 228
Q  238 L 229
M  239 F 230
V  240 L 231
I  241 C 232
E  242 S 233
N  243 A 236
P  244 S 237
F  245 W 238
L  246 V 239
N  247 S 240
G  248 G 241
E  249 Q 242
V  250 I 243
I  251 L 244
R  252 T 245
L  253 V 246
D  254 S 247
G  255 G 248
A  256 G 249
I  257 G 250
R  258 V 251
M  259 Q 252
Q  260 N 255
TER
END

