
PFRMAT SS
TARGET T0112
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.99
A C 0.71
S H 0.10
D H 0.04
N C 0.19
L E 0.44
S E 0.82
A E 0.72
V E 0.92
L E 0.70
Y E 0.40
K E 0.07
Q C 0.50
N C 0.84
D C 0.68
L E 0.78
R E 0.94
L E 0.95
E E 0.94
Q E 0.86
R E 0.19
P E 0.19
I C 0.66
P C 0.89
E C 0.91
P C 0.86
K C 0.94
E C 0.90
D C 0.87
E E 0.48
V E 0.89
L E 0.94
L E 0.95
Q E 0.95
M E 0.92
A E 0.86
Y E 0.89
V E 0.82
G E 0.74
I E 0.51
C E 0.68
G H 0.12
S H 0.10
D H 0.10
V C 0.01
H E 0.09
Y E 0.36
Y E 0.23
E E 0.08
H C 0.71
G C 0.75
R C 0.77
I C 0.79
A C 0.84
D C 0.84
F C 0.83
I C 0.77
V C 0.76
K C 0.89
D C 0.86
P C 0.83
M E 0.23
V E 0.23
I C 0.08
G C 0.62
H C 0.67
E C 0.72
A C 0.02
S E 0.85
G E 0.94
T E 0.95
V E 0.96
V E 0.83
K E 0.80
V E 0.21
G C 0.75
K C 0.83
N C 0.89
V C 0.81
K C 0.88
H C 0.75
L C 0.64
K C 0.89
K C 0.82
G C 0.87
D C 0.92
R E 0.91
V E 0.78
A E 0.23
V E 0.21
E C 0.29
P C 0.67
G C 0.76
V C 0.83
P C 0.91
C C 0.88
R C 0.85
R C 0.77
C C 0.81
Q C 0.23
F C 0.13
C C 0.13
K C 0.21
E C 0.85
G C 0.82
K C 0.83
Y C 0.31
N C 0.37
L C 0.58
C C 0.78
P C 0.81
D C 0.79
L C 0.59
T E 0.16
F E 0.28
C E 0.06
A C 0.70
T C 0.73
P C 0.75
P C 0.84
D C 0.89
D C 0.91
G C 0.92
N C 0.66
L C 0.40
A E 0.40
R E 0.38
Y E 0.85
Y E 0.81
V E 0.94
H E 0.63
A E 0.08
A H 0.13
D H 0.32
F H 0.54
C E 0.67
H E 0.65
K E 0.81
L C 0.83
P C 0.80
D C 0.82
N C 0.78
V C 0.84
S C 0.93
L H 0.89
E H 0.78
E H 0.82
G H 0.09
A C 0.60
L C 0.33
L C 0.43
E C 0.45
P H 0.19
L H 0.54
S H 0.77
V H 0.76
G H 0.82
V H 0.69
H H 0.77
A H 0.76
C H 0.71
R H 0.55
R H 0.24
A C 0.30
G C 0.88
V C 0.83
Q C 0.93
L C 0.87
G C 0.87
T C 0.93
T E 0.91
V E 0.90
L E 0.92
V E 0.93
I E 0.84
G C 0.90
A C 0.89
G C 0.92
P H 0.86
I H 0.93
G H 0.93
L H 0.94
V H 0.96
S H 0.95
V H 0.96
L H 0.96
A H 0.96
A H 0.94
K H 0.92
A H 0.67
Y C 0.01
G C 0.95
A C 0.91
F E 0.79
V E 0.93
V E 0.97
C E 0.94
T E 0.88
A E 0.36
R C 0.78
S C 0.95
P H 0.92
R H 0.91
R H 0.95
L H 0.96
E H 0.95
V H 0.95
A H 0.95
K H 0.94
N H 0.84
C H 0.43
G C 0.87
A C 0.94
D C 0.43
V E 0.78
T E 0.97
L E 0.95
V E 0.86
V E 0.64
D C 0.80
P C 0.68
A C 0.54
K C 0.43
E C 0.46
E C 0.54
E C 0.08
S H 0.79
S H 0.83
I H 0.92
I H 0.96
E H 0.95
R H 0.96
I H 0.96
R H 0.95
S H 0.92
A H 0.83
I H 0.37
G C 0.89
D C 0.94
L C 0.93
P C 0.92
N C 0.81
V E 0.88
T E 0.93
I E 0.91
D E 0.82
C C 0.58
S C 0.10
G C 0.59
N C 0.80
E H 0.77
K H 0.89
C H 0.92
I H 0.95
T H 0.95
I H 0.94
G H 0.96
I H 0.96
N H 0.94
I H 0.85
T H 0.60
R C 0.18
T C 0.82
G C 0.92
G C 0.95
T E 0.90
L E 0.96
M E 0.96
L E 0.94
V E 0.75
G C 0.77
M C 0.16
G C 0.80
S C 0.85
Q C 0.54
M C 0.43
V C 0.33
T C 0.23
V C 0.24
P C 0.27
L H 0.39
V H 0.34
N H 0.48
A E 0.20
C E 0.27
A E 0.25
R C 0.07
E C 0.11
I E 0.57
D E 0.92
I E 0.90
K E 0.72
S E 0.59
V C 0.71
F C 0.02
R C 0.86
Y C 0.77
C H 0.70
N H 0.46
D H 0.75
Y H 0.93
P H 0.90
I H 0.94
A H 0.96
L H 0.95
E H 0.97
M H 0.95
V H 0.93
A H 0.74
S C 0.58
G C 0.93
R C 0.92
C C 0.86
N C 0.91
V C 0.49
K C 0.39
Q C 0.14
L E 0.44
V E 0.69
T E 0.85
H E 0.82
S E 0.74
F E 0.15
K C 0.30
L H 0.88
E H 0.90
Q H 0.86
T H 0.94
V H 0.93
D H 0.93
A H 0.95
F H 0.96
E H 0.96
A H 0.95
A H 0.92
R H 0.78
K H 0.07
K C 0.87
A C 0.92
D C 0.95
N C 0.80
T E 0.42
I E 0.72
K E 0.94
V E 0.94
M E 0.96
I E 0.94
S E 0.93
C E 0.66
R C 0.62
Q C 0.87
G C 0.96
END

