
PFRMAT AL
TARGET T0112
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1hld_A
M    1 S 1
A    2 T 2
S    3 A 3
D    4 G 4
N    5 K 5
L    6 V 6
S    7 A 11
A    8 A 12
V    9 V 13
L   10 L 14
Y   11 W 15
K   12 E 16
Q   13 E 17
N   14 K 18
D   15 K 19
L   16 F 21
R   17 S 22
L   18 I 23
E   19 E 24
Q   20 E 25
R   21 V 26
P   22 E 27
I   23 V 28
P   24 A 29
E   25 P 30
P   26 P 31
K   27 K 32
E   28 A 33
D   29 H 34
E   30 E 35
V   31 V 36
L   32 R 37
L   33 I 38
Q   34 K 39
M   35 M 40
A   36 V 41
Y   37 A 42
V   38 T 43
G   39 G 44
I   40 I 45
C   41 C 46
G   42 R 47
S   43 S 48
D   44 D 49
V   45 D 50
H   46 H 51
Y   47 V 52
Y   48 V 53
E   49 S 54
A   54 G 55
D   55 T 56
F   56 L 57
I   57 V 58
V   58 T 59
K   59 P 60
D   60 L 61
P   61 P 62
M   62 V 63
V   63 I 64
I   64 A 65
G   65 G 66
H   66 H 67
E   67 E 68
A   68 A 69
S   69 A 70
G   70 G 71
T   71 I 72
V   72 V 73
V   73 E 74
K   74 S 75
V   75 I 76
G   76 G 77
K   77 E 78
N   78 G 79
V   79 V 80
K   80 T 81
H   81 T 82
L   82 V 83
K   83 R 84
K   84 P 85
G   85 G 86
D   86 D 87
R   87 K 88
V   88 V 89
A   89 I 90
V   90 P 91
E   91 L 92
P   92 F 93
G   93 T 94
V   94 P 95
P   95 Q 96
C   96 C 97
R   97 G 98
R   98 K 99
C   99 C 100
Q  100 R 101
F  101 V 102
C  102 C 103
K  103 K 104
E  104 H 105
G  105 P 106
K  106 E 107
Y  107 G 108
N  108 N 109
L  109 F 110
C  110 C 111
P  111 L 112
D  112 K 113
L  113 N 114
T  114 D 115
F  115 L 116
C  116 S 117
P  119 M 118
P  120 P 119
D  121 R 120
D  122 D 125
G  123 G 126
N  124 T 127
L  125 F 146
A  126 S 147
R  127 Q 148
Y  128 Y 149
Y  129 T 150
V  130 V 151
H  131 V 152
A  132 D 153
A  133 E 154
D  134 I 155
F  135 S 156
C  136 V 157
H  137 A 158
K  138 K 159
L  139 I 160
P  140 D 161
D  141 A 162
N  142 A 163
V  143 S 164
S  144 P 165
L  145 L 166
E  146 E 167
E  147 K 168
G  148 V 169
A  149 C 170
L  150 L 171
L  151 I 172
E  152 G 173
P  153 C 174
L  154 F 176
S  155 S 177
V  156 T 178
G  157 G 179
V  158 Y 180
H  159 G 181
A  160 A 183
C  161 V 184
R  162 K 185
R  163 V 186
A  164 A 187
G  165 K 188
V  166 V 189
Q  167 T 190
L  168 Q 191
G  169 G 192
T  170 S 193
T  171 T 194
V  172 C 195
L  173 A 196
V  174 V 197
I  175 F 198
G  176 G 199
A  177 L 200
G  178 G 201
P  179 G 202
I  180 V 203
G  181 G 204
L  182 L 205
V  183 S 206
S  184 V 207
V  185 I 208
L  186 M 209
A  187 G 210
A  188 C 211
K  189 K 212
A  190 A 213
Y  191 A 214
G  192 G 215
A  193 A 216
F  194 R 218
V  195 I 219
V  196 I 220
C  197 G 221
T  198 V 222
A  199 D 223
R  200 I 224
S  201 N 225
P  202 K 226
R  203 D 227
R  204 K 228
L  205 F 229
E  206 A 230
V  207 K 231
A  208 A 232
K  209 K 233
N  210 E 234
C  211 V 235
G  212 G 236
A  213 A 237
T  216 T 238
L  217 E 239
V  218 C 240
V  219 V 241
D  220 N 242
P  221 P 243
K  223 Q 244
E  224 D 245
E  225 Y 246
E  226 K 247
S  227 K 248
S  228 P 249
I  229 I 250
I  230 Q 251
E  231 E 252
R  232 V 253
I  233 L 254
R  234 T 255
S  235 E 256
A  236 M 257
I  237 S 258
G  238 N 259
D  239 G 260
L  240 G 261
P  241 V 262
N  242 D 263
V  243 F 264
T  244 S 265
I  245 F 266
D  246 E 267
C  247 V 268
S  248 I 269
G  249 G 270
N  250 R 271
E  251 L 272
K  252 D 273
C  253 T 274
I  254 M 275
T  255 V 276
I  256 T 277
G  257 A 278
I  258 L 279
N  259 S 280
I  260 C 281
T  261 C 282
R  262 Q 283
T  263 E 284
G  264 A 285
G  265 G 287
T  266 V 288
L  267 S 289
M  268 V 290
L  269 I 291
V  270 V 292
G  271 G 293
M  272 V 294
G  273 P 295
S  274 P 296
Q  275 D 297
M  276 S 298
V  277 L 301
T  278 S 302
V  279 M 303
P  280 N 304
L  281 L 308
V  282 L 309
N  283 S 310
A  284 G 311
C  285 R 312
A  286 T 313
R  287 W 314
E  288 K 315
I  289 G 316
D  290 A 317
I  291 I 318
K  292 F 319
S  293 G 320
V  294 G 321
F  295 F 322
R  296 K 323
Y  297 S 324
C  298 K 325
N  299 D 326
D  300 S 327
Y  301 V 328
P  302 P 329
I  303 K 330
A  304 L 331
L  305 V 332
E  306 A 333
M  307 D 334
V  308 F 335
A  309 M 336
S  310 A 337
G  311 K 338
R  312 K 339
C  313 F 340
N  314 A 341
V  315 L 342
K  316 D 343
Q  317 P 344
L  318 L 345
V  319 I 346
T  320 T 347
H  321 H 348
S  322 V 349
F  323 L 350
K  324 P 351
L  325 F 352
E  326 E 353
Q  327 K 354
T  328 I 355
V  329 N 356
D  330 E 357
A  331 G 358
F  332 F 359
E  333 D 360
A  334 L 361
A  335 L 362
R  336 R 363
K  337 S 364
D  340 G 365
N  341 E 366
T  342 S 367
I  343 I 368
K  344 R 369
V  345 T 370
M  346 I 371
I  347 L 372
S  348 T 373
C  349 F 374
TER
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