
PFRMAT SS
TARGET T0109
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.98
S C 0.77
F C 0.64
D C 0.50
K C 0.28
Q C 0.80
N C 0.77
L E 0.64
I E 0.89
W E 0.96
I E 0.95
D E 0.74
L C 0.39
E C 0.35
M C 0.12
T C 0.11
G C 0.77
L C 0.78
D C 0.81
P C 0.51
E C 0.69
K C 0.64
E E 0.01
R E 0.07
I E 0.84
I E 0.89
E E 0.93
I E 0.93
A E 0.95
T E 0.95
I E 0.96
V E 0.93
T E 0.80
D C 0.09
K C 0.67
N C 0.61
L C 0.38
N C 0.46
I C 0.74
L C 0.21
A C 0.16
E C 0.20
G C 0.19
P C 0.05
V E 0.59
L E 0.91
A E 0.92
V E 0.89
H E 0.60
Q C 0.83
S C 0.95
D H 0.94
E H 0.95
L H 0.88
L H 0.88
N H 0.64
K H 0.16
M C 0.27
N C 0.41
D H 0.26
W H 0.78
C H 0.74
Q H 0.80
K H 0.57
T C 0.10
H C 0.30
S C 0.16
E C 0.05
N C 0.04
G C 0.50
L C 0.04
I H 0.83
E H 0.86
R H 0.93
I H 0.90
K H 0.58
A C 0.62
S C 0.88
K C 0.91
L C 0.91
T C 0.75
E H 0.79
R H 0.94
A H 0.92
A H 0.94
E H 0.91
L H 0.96
Q H 0.97
T H 0.96
L H 0.96
D H 0.96
F H 0.94
L H 0.92
K H 0.78
K H 0.33
W H 0.17
V C 0.73
P C 0.56
K C 0.75
G C 0.83
A C 0.91
S C 0.88
P C 0.62
I E 0.51
C E 0.31
G E 0.63
N E 0.25
S H 0.36
I H 0.79
A H 0.90
Q H 0.89
D H 0.79
K H 0.97
R H 0.97
F H 0.95
L H 0.98
V H 0.97
K H 0.96
Y H 0.94
M H 0.81
P H 0.94
D H 0.88
L H 0.91
A H 0.81
D H 0.67
Y H 0.50
F C 0.40
H C 0.82
Y C 0.45
R C 0.18
H C 0.51
L C 0.78
D C 0.75
V H 0.64
S H 0.45
T H 0.41
L H 0.89
K H 0.89
E H 0.91
L H 0.90
A H 0.88
A H 0.72
R H 0.62
W C 0.28
K C 0.81
P H 0.11
E H 0.50
I H 0.37
L H 0.26
E C 0.27
G C 0.78
F C 0.87
K C 0.69
K C 0.74
E C 0.79
N C 0.59
T C 0.42
H C 0.02
L H 0.41
A H 0.46
L H 0.81
D H 0.89
D H 0.84
I H 0.95
R H 0.97
E H 0.95
S H 0.95
I H 0.96
K H 0.96
E H 0.96
L H 0.96
A H 0.96
Y H 0.96
Y H 0.95
R H 0.91
E H 0.89
H H 0.86
F H 0.17
M H 0.14
K H 0.08
L C 0.38
D C 0.95
END

