
PFRMAT AL
TARGET T0109
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1efc_A
R  74    D 138
I  75    M 139
K  76    V 140
A  77    D 141
S  78    D 142
K  79    E 143
L  80    E 144
T  81    L 145
E  82    L 146
R  83    E 147
A  84    L 148
A  85    V 149
E  86    E 150
L  87    M 151
Q  88    E 152
T  89    V 153
L  90    R 154
D  91    E 155
F  92    L 156
L  93    L 157
K  94    S 158
K  95    Q 159
W  96    Y 160
V  97    F 162
P  98    P 163
K  99    G 164
G 100    D 165
A 101    D 166
S 102    T 167
P 103    P 168
I 104    I 169
C 105    V 170
G 106    R 171
N 107    G 172
S 108    S 173
I 109    A 174
A 110    L 175
Q 111    K 176
D 112    A 177
K 113    L 178
R 114    G 193
F 115    F 194
L 116    L 195
V 117    D 196
K 118    S 197
Y 119    Y 198
M 120    I 199
P 121    P 200
D 122    E 201
L 123    I 206
A 124    D 207
D 125    K 208
Y 126    P 209
F 127    F 210
H 128    L 211
Y 129    L 212
R 130    P 213
H 131    I 214
L 132    E 215
D 133    D 216
V 134    V 217
S 135    F 218
T 136    S 219
L 137    I 220
K 138    S 221
E 139    G 222
L 140    R 223
A 141    G 224
A 142    T 225
R 143    V 226
W 144    V 227
K 145    T 228
P 146    G 229
E 147    R 230
I 148    V 231
L 149    E 232
E 150    R 233
G 151    G 234
F 152    I 235
K 153    I 236
K 154    K 237
E 155    V 238
N 156    G 239
T 157    E 240
H 158    E 241
L 159    V 242
A 160    E 243
L 161    I 244
D 162    V 245
D 163    G 246
I 164    I 247
R 165    K 248
E 166    E 249
S 167    T 250
I 168    Q 251
K 169    K 252
E 170    S 253
L 171    T 254
A 172    C 255
Y 173    T 256
Y 174    G 257
R 175    V 258
E 176    E 259
H 177    M 260
F 178    F 261
M 179    R 262
K 180    K 263
L 181    L 264
TER
END


