
PFRMAT AL
TARGET T0109
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1qqc_A
K   5    E 134
Q   6    L 135
N   7    R 136
L   8    M 137
I   9    L 138
W  10    A 139
I  11    F 140
D  12    D 141
L  13    I 142
E  14    E 143
M  15    T 144
L  18    L 145
D  19    Y 146
P  20    H 147
E  21    E 148
K  22    G 149
E  23    E 150
R  24    E 151
I  25    F 152
A  41    G 153
E  42    E 154
G  43    G 155
P  44    P 156
V  45    I 157
L  46    L 158
A  47    M 159
V  48    I 160
H  49    S 161
Q  50    Y 162
S  51    A 163
D  52    D 164
E  53    E 165
L  54    E 166
L  55    G 167
N  56    A 168
K  57    R 169
M  58    V 170
N  59    I 171
D  60    T 172
W  61    W 173
C  62    K 174
G  70    N 175
L  71    I 176
I  72    D 177
E  73    L 178
R  74    P 179
I  75    Y 180
K  76    V 181
A  77    E 182
S  78    S 183
K  79    V 184
L  80    S 185
T  81    T 186
E  82    E 187
R  83    K 188
A  84    E 189
A  85    M 190
E  86    I 191
L  87    K 192
Q  88    R 193
T  89    F 194
L  90    L 195
D  91    K 196
F  92    V 197
L  93    I 198
K  94    Q 199
K  95    E 200
W  96    K 201
V  97    D 202
P  98    P 203
A 101    D 204
S 102    V 205
P 103    L 206
I 104    I 207
C 105    T 208
G 106    Y 209
N 107    N 210
S 108    G 211
I 109    D 212
A 110    N 213
Q 111    F 214
D 112    D 215
K 113    F 216
R 114    A 217
F 115    Y 218
L 116    L 219
V 117    K 220
K 118    K 221
Y 119    R 222
M 120    S 223
P 121    E 224
D 122    M 225
L 123    L 226
A 124    G 227
D 125    V 228
Y 126    K 229
F 127    F 230
H 128    I 231
Y 129    L 232
R 130    G 233
H 131    R 234
L 132    D 235
S 135    G 236
T 136    S 237
L 137    E 238
K 138    P 239
E 139    K 240
L 140    I 241
A 141    Q 242
A 142    R 243
R 143    M 244
W 144    G 245
K 145    D 246
P 146    R 247
L 149    F 248
E 150    A 249
G 151    V 250
F 152    E 251
K 153    V 252
K 154    K 253
E 155    G 254
N 156    R 255
T 157    I 256
H 158    H 257
L 159    F 258
A 160    D 259
L 161    L 260
D 162    Y 261
D 163    P 262
I 164    V 263
R 165    I 264
E 166    R 265
S 167    R 266
I 168    T 267
K 169    I 268
E 170    N 269
L 171    L 270
A 172    P 271
Y 173    T 272
Y 174    Y 273
R 175    T 274
E 176    L 275
H 177    E 276
F 178    T 277
M 179    V 278
TER
END


