
PFRMAT AL
TARGET T0109
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1kfd
N   7    P 350
L   8    V 351
I   9    F 352
W  10    A 353
I  11    F 354
D  12    D 355
L  13    T 356
E  14    E 357
M  15    T 358
T  16    D 359
G  17    S 360
L  18    L 361
D  19    D 362
P  20    N 363
E  21    I 364
K  22    S 365
E  23    A 366
R  24    N 367
I  25    L 368
I  26    V 369
E  27    G 370
I  28    L 371
A  29    S 372
T  30    F 373
I  31    A 374
V  32    I 375
T  33    E 376
D  34    P 377
K  35    G 378
K  79    Q 395
L  80    I 396
T  81    S 397
E  82    R 398
R  83    E 399
A  84    R 400
A  85    A 401
E  86    L 402
L  87    E 403
Q  88    L 404
T  89    L 405
L  90    K 406
D  91    P 407
F  92    L 408
L  93    L 409
K  94    E 410
K  95    D 411
P 103    L 415
I 104    K 416
C 105    V 417
G 106    G 418
N 107    Q 419
S 108    N 420
I 109    L 421
A 110    K 422
Q 111    Y 423
D 112    D 424
K 113    R 425
R 114    G 426
F 115    I 427
F 127    E 434
H 128    L 435
Y 129    R 436
R 130    G 437
H 131    A 439
L 132    F 440
D 133    D 441
V 134    T 442
L 137    L 461
K 138    E 463
E 139    R 464
L 140    W 465
A 141    L 466
A 142    K 467
R 143    H 468
W 144    K 469
K 145    T 470
P 146    I 471
E 147    T 472
I 148    F 473
L 149    E 474
E 150    E 475
G 151    I 476
F 152    A 477
K 153    G 478
A 160    A 498
L 161    A 499
D 162    E 500
D 163    D 501
I 164    A 502
R 165    D 503
E 166    V 504
S 167    T 505
I 168    L 506
K 169    Q 507
E 170    L 508
L 171    H 509
A 172    L 510
Y 173    K 511
Y 174    M 512
R 175    W 513
E 176    P 514
H 177    D 515
F 178    L 516
TER
END


