
PFRMAT AL
TARGET T0109
AUTHOR 3995-5176-6362
METHOD Chandonia & Cohen, mostly unpublished.
METHOD Uses a combination of PSI-BLAST scoring matrix
METHOD and Pred2ary secondary structure prediction.
METHOD Pred2ary page is http://www.cmpharm.ucsf.edu/~jmc/pred2ary/
METHOD The potential is documented in the paper by
METHOD Schwartz et al which is referenced on
METHOD my research page: http://www.cmpharm.ucsf.edu/~jmc/research.html
MODEL 1
PARENT 1gse_A
M 1 L 81
S 2 Y 82
G 17 G 83
L 18 K 84
D 19 D 85
L 55 I 86
N 56 K 87
K 57 E 88
M 58 R 89
N 59 A 90
D 60 L 91
W 61 I 92
C 62 D 93
Q 63 M 94
K 64 Y 95
T 65 I 96
H 66 E 97
S 67 G 98
E 68 I 99
N 69 A 100
G 70 D 101
L 71 L 102
I 72 G 103
E 73 E 104
R 74 M 105
I 75 I 106
K 76 L 107
A 77 L 108
S 78 L 109
K 79 P 110
L 80 V 111
T 81 C 112
E 82 P 113
R 83 P 114
A 84 E 115
A 85 E 116
E 86 K 117
L 87 D 118
Q 88 A 119
T 89 K 120
L 90 L 121
D 91 A 122
F 92 L 123
L 93 I 124
K 94 K 125
K 95 E 126
W 96 K 127
V 97 I 128
P 98 K 129
K 99 N 130
G 100 G 144
A 101 Q 145
S 102 D 146
P 103 Y 147
I 104 L 148
C 105 V 149
G 106 G 150
N 107 N 151
S 108 K 152
I 109 L 153
A 110 S 154
Q 111 R 155
D 112 A 156
K 113 D 157
R 114 I 158
F 115 H 159
L 116 L 160
V 117 V 161
K 118 E 162
Y 119 L 163
M 120 L 164
P 121 Y 165
D 122 Y 166
L 123 V 167
A 124 E 168
D 125 E 169
Y 126 L 170
F 127 D 171
H 128 S 172
Y 129 S 173
R 130 L 174
H 131 I 175
L 132 S 176
D 133 S 177
V 134 F 178
S 135 P 179
T 136 L 180
L 137 L 181
K 138 K 182
E 139 A 183
L 140 L 184
A 141 K 185
A 142 T 186
R 143 R 187
W 144 I 188
K 145 L 191
P 146 P 192
E 147 T 193
I 148 V 194
L 149 K 195
E 150 K 196
G 151 G 201
F 152 S 202
K 153 P 203
K 154 R 204
E 155 K 205
N 156 P 206
T 157 P 207
H 158 M 208
L 159 D 209
R 165 E 210
E 166 K 211
S 167 S 212
I 168 L 213
K 169 E 214
E 170 E 215
L 171 A 216
A 172 R 217
Y 173 K 218
Y 174 I 219
K 180 F 220
L 181 R 221
D 182 F 222
TER
END

