
PFRMAT AL
TARGET T0109
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1pd2_1
M    1 M 1
S    2 P 2
F    3 N 3
D    4 Y 4
K    5 K 5
L    8 L 6
I    9 L 7
W   10 Y 8
I   11 F 9
D   12 N 10
L   13 F 22
E   14 A 23
M   15 Y 24
T   16 L 25
G   17 D 26
L   18 I 27
D   19 K 28
P   20 Y 29
E   21 E 30
K   22 D 31
E   23 H 32
R   24 R 33
I   25 I 34
E   27 E 35
I   28 Q 36
A   29 A 37
T   30 D 38
I   31 W 39
V   32 P 40
T   33 K 41
D   34 I 42
K   35 K 43
N   36 P 44
L   37 T 45
N   38 L 46
I   39 P 47
L   40 F 48
A   41 G 49
E   42 K 50
G   43 I 51
P   44 P 52
V   45 V 53
L   46 L 54
A   47 E 55
V   48 V 56
H   49 H 62
Q   50 Q 63
S   51 S 64
D   52 L 65
E   53 A 66
L   54 I 67
L   55 A 68
N   56 R 69
W   61 Y 70
C   62 L 71
Q   63 T 72
K   64 K 73
T   65 N 74
H   66 T 75
S   67 D 76
E   68 L 77
N   69 A 78
G   70 G 79
L   71 E 82
I   72 L 83
E   73 E 84
R   74 Q 85
I   75 C 86
K   76 Q 87
A   77 V 88
R   83 D 89
A   84 A 90
A   85 V 91
E   86 V 92
L   87 D 93
Q   88 T 94
T   89 L 95
L   90 D 96
D   91 D 97
F   92 F 98
L   93 M 99
K   94 S 100
K   95 L 101
W   96 F 102
V   97 P 103
P   98 W 104
K   99 A 105
G  100 E 106
A  101 E 107
S  102 N 108
P  103 Q 109
N  107 D 110
S  108 L 111
I  109 K 112
A  110 E 113
Q  111 R 114
D  112 T 115
K  113 N 117
R  114 D 118
F  115 L 119
L  116 L 120
V  117 T 121
K  118 R 122
Y  119 Q 123
M  120 A 124
P  121 P 125
D  122 H 126
L  123 L 127
A  124 L 128
D  125 K 129
Y  126 D 130
F  127 L 131
H  128 Y 145
Y  129 V 146
R  130 T 147
H  131 W 148
L  132 A 149
D  133 D 150
V  134 F 151
S  135 Y 152
T  136 W 153
L  137 D 154
K  138 I 155
E  139 C 156
L  140 S 157
A  141 L 160
A  142 L 161
R  143 V 162
W  144 L 163
K  145 K 164
P  146 P 165
E  147 D 166
I  148 L 167
L  149 L 168
E  150 G 169
G  151 I 170
F  152 Y 171
K  153 P 172
A  160 R 173
L  161 L 174
D  162 V 175
D  163 S 176
I  164 L 177
R  165 R 178
E  166 N 179
S  167 K 180
I  168 V 181
K  169 Q 182
E  170 A 183
L  171 I 184
A  172 P 185
Y  173 A 186
Y  174 I 187
R  175 S 188
E  176 A 189
H  177 W 190
F  178 I 191
M  179 T 197
K  180 K 198
L  181 L 199
TER
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