
PFRMAT AL
TARGET T0109
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.51 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: DNA_pol_B
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1clq_A
M   1     Y   103
S   2     D   104
F   3     H   105
D   4     T   106
K   5     K   107
Q   6     I   108
N   7     R   109
L   8     V   110
I   9     A   111
W  10     N   112
I  11     F   113
D  12     D   114
L  13     I   115
E  14     E   116
M  15     V   117
T  16     T   118
G  17     S   119
L  18     P   120
D  19     D   121
P  20     G   122
E  21     F   123
K  22     P   124
E  23     E   125
R  24     P   126
I  25     S   127
I  26     H   131
E  27     P   132
I  28     I   133
A  29     D   134
T  30     A   135
I  31     I   136
V  32     T   137
T  33     H   138
D  34     Y   139
K  35     D   140
N  36     S   141
L  37     I   142
N  38     D   143
I  39     D   144
L  40     R   145
A  41     F   146
E  42     Y   147
G  43     V   148
P  44     F   149
V  45     D   150
L  46     L   151
A  47     L   152
V  48     N   153
H  49     S   154
Q  50     P   155
S  51     Y   156
D  52     G   157
E  53     N   158
L  54     V   159
L  55     E   160
N  56     E   161
K  57     W   162
M  58     S   163
N  59     I   164
D  60     E   165
W  61     I   166
C  62     A   167
Q  63     A   168
K  64     K   169
T  65     L   170
H  66     Q   171
S  67     E   172
E  68     Q   173
N  69     G   174
G  70     G   175
L  71     V   178
I  72     P   179
E  73     S   180
R  74     E   181
I  75     I   182
K  76     I   183
A  77     D   184
S  78     I   187
K  79     Y   188
L  80     M   189
T  81     P   190
E  82     F   191
R  83     D   192
A  84     N   193
A  85     E   194
E  86     K   195
L  87     E   196
Q  88     L   197
T  89     L   198
L  90     M   199
D  91     E   200
F  92     Y   201
L  93     L   202
K  94     N   203
K  95     F   204
W  96     W   205
V  97     Q   206
P  98     Q   207
K  99     K   208
G 100     T   209
A 101     P   210
S 102     V   211
P 103     I   212
I 104     L   213
C 105     T   214
G 106     G   215
N 107     W   216
S 108     N   217
I 109     V   218
A 110     E   219
Q 111     F   221
D 112     D   222
K 113     I   223
R 114     P   224
F 115     Y   225
L 116     V   226
V 117     Y   227
K 118     N   228
Y 119     R   229
M 120     I   230
P 121     K   231
D 122     N   232
L 123     I   233
A 124     K   240
D 125     R   241
Y 126     L   242
F 127     S   243
H 128     P   244
Y 129     H   245
R 130     R   246
H 131     K   247
L 132     T   248
D 133     R   249
V 134     V   250
S 135     K   251
T 136     V   252
L 137     I   253
K 138     E   254
E 139     N   255
L 140     M   256
A 141     Y   257
A 142     G   258
R 143     S   259
W 144     R   260
K 145     E   261
P 146     I   262
E 147     I   263
I 148     T   264
L 149     L   265
E 150     F   266
G 151     G   267
F 152     I   268
K 153     S   269
K 154     V   270
E 155     L   271
N 156     D   272
T 157     Y   273
H 158     I   274
L 159     D   275
A 160     L   276
L 161     Y   277
D 162     K   278
D 163     K   279
I 164     F   280
R 165     S   287
E 166     Y   288
S 167     S   289
I 168     L   290
K 169     D   291
E 170     Y   292
L 171     I   293
A 172     S   294
Y 173     E   295
Y 174     F   296
R 175     E   297
E 176     L   298
H 177     N   299
F 178     V   300
M 179     G   301
K 180     K   302
L 181     L   303
D 182     K   304
TER
END

