
PFRMAT AL
TARGET T0108
AUTHOR 7023-8870-2129
METHOD Using the full sequence (which contains, as far as I can tell, a 
METHOD TIM-barrel type endocellulase, a linker sequence and the CBD), I 
METHOD did a converged PSI-blast and saved the profile.  Searching with 
METHOD this profile through PDB/scop sequences predictively finds TIM 
METHOD barrel type endocellulases for the N-terminus, and weak hits to 
METHOD CBD modules (e.g. 1exg), but also intriguingly to IgG FAB fragments 
METHOD at the C-terminus. 
METHOD 
METHOD I combined the PSI-blast alignment (E-value 0.15) with alignments 
METHOD of homologues to the target (T0107 versus NR blastpgp) and those 
METHOD of 1exg (PFAM family CBD_2) and with other known strucutres (some 
METHOD remote) as aligned by STAMP.  
MODEL 1
PARENT 1exg
L  82    A   1
S  83    S   2
E  84    S   3
G  85    G   4
N  86    P   5
F  87    A   6
W  88    G   7
A  89    C   8
N  90    Q   9
V  91    V  10
R  92    L  11
I  93    W  12
S  94    G  13
A  95    V  14
D  96    N  15
I  97    Q  16
W  98    W  17
G  99    N  18
Q 100    T  19
S 101    G  20
I 102    F  21
N 103    T  22
I 104    A  23
Y 105    N  24
G 106    V  25
D 107    T  26
T 108    V  27
K 109    K  28
L 110    N  29
T 111    T  30
M 112    S  31
D 113    S  32
V 114    A  33
I 115    P  34
A 116    V  35
P 117    D  36
T 118    G  37
P 119    W  38
V 120    T  39
N 121    L  40
V 122    T  41
S 123    F  42
I 124    S  43
A 125    F  44
A 126    P  45
I 127    S  46
P 128    G  47
Q 129    Q  48
S 130    Q  49
S 131    V  50
T 132    T  51
H 133    Q  52
G 134    A  53
W 135    W  54
G 136    S  55
N 137    S  56
P 138    T  57
T 139    V  58
R 140    T  59
A 141    Q  60
R 142    S  61
I 143    G  62
V 144    S  63
W 145    A  64
T 146    V  65
N 147    T  66
N 148    V  67
F 149    R  68
V 150    N  69
A 151    A  70
Q 152    P  71
T 153    W  72
D 154    N  73
G 155    G  74
T 156    S  75
Y 157    I  76
K 158    P  77
A 159    A  78
T 160    G  79
L 161    G  80
T 162    T  81
I 163    A  82
S 164    Q  83
T 165    F  84
N 166    G  85
D 167    F  86
S 168    N  87
P 169    G  88
N 170    S  89
F 171    H  90
N 172    T  91
T 173    G  92
I 174    T  93
A 175    N  94
T 176    A  95
D 177    A  96
A 178    P  97
A 179    T  98
D 180    A  99
S 181    F 100
V 182    S 101
V 183    L 102
T 184    N 103
N 185    G 104
M 186    T 105
I 187    P 106
L 188    C 107
F 189    T 108
V 190    V 109
G 191    G 110
TER
END

