
PFRMAT AL
TARGET T0108
AUTHOR 5477-6509-1337
REMARK
REMARK   Work performed by Kai-Ming Ho, James R. Morris, Cai-Zhuang Wang,
REMARK                   Drena Dobbs, Tzu-Liang Chan, Young-Ok Im,
REMARK                   Josh Koch, Neil Voss, Dion Harmon
REMARK
REMARK   Acknowledgments to Amy Andreotti and Josh Lapan
REMARK
REMARK   Work supported by Pioneer Hi-Bred, by a Carver Foundation grant
REMARK     from Iowa State University, and a Laboratory Directed 
REMARK     Research and Development grant from Ames Laboratory, U.S.D.O.E.
REMARK
REMARK
METHOD  This prediction is based upon structural recognition, based upon
METHOD  counting the number of hydrophobic contacts and on scoring the 
METHOD  energy with a modified Miyazawa-Jernigan matrix.  The structural
METHOD  threading used here included an exhaustive search for single
METHOD  insertion or deletion regions.  We have aligned the target
METHOD  with residues 113-317 of the PDB file 1bk5, chain A.  The alignment
METHOD  includes a one residue deletion from the target sequence,
METHOD  which improves the threading scores significantly.
METHOD
REMARK
MODEL 1 refined
PARENT 1jkm_A
M  1    G  A113
G  2    V  A114
A  3    E  A115
S  4    G  A116
G  5    V  A117
Q  6    L  A118
Y  7    P  A119
V  8    G  A120
R  9    L  A121
A  10    V  A122
R  11    Y  A123
I  12    T  A124
K  13    H  A125
G  14    G  A126
A  15    G  A127
Y  16    G  A128
Y  17    M  A129
A  18    T  A130
T  19    I  A131
P  20    L  A132
V  21    T  A133
D  22    T  A134
P  23    D  A135
V  24    N  A136
T  25    R  A137
N  26    V  A138
Q  27    H  A139
P  28    R  A140
T  29    R  A141
A  30    W  A142
P  31    C  A143
K  32    T  A144
D  33    D  A145
F  34    L  A146
S  35    A  A147
S  36    A  A148
G  37    A  A149
F  38    G  A150
W  39    S  A151
D  40    V  A152
F  41    V  A153
N  42    V  A154
D  43    M  A155
G  44    V  A156
T  45    D  A157
T  46    F  A158
Q  47    R  A159
G  48    N  A160
F  49    A  A161
G  50    W  A162
V  51    T  A163
N  52    A  A164
P  53    E  A165
D  54    G  A166
S  55    H  A167
P  56    H  A168
I  57    P  A169
T  58    F  A170
A  59    P  A171
I  60    S  A172
N  61    G  A173
V  62    V  A174
E  63    E  A175
N  64    D  A176
A  65    C  A177
N  66    L  A178
A  68    A  A179
L  69    A  A180
K  70    V  A181
I  71    L  A182
S  72    W  A183
N  73    V  A184
L  74    D  A185
N  75    E  A186
S  76    H  A187
K  77    R  A188
G  78    E  A189
S  79    S  A190
N  80    L  A191
D  81    G  A192
L  82    L  A193
S  83    S  A194
E  84    G  A195
G  85    V  A196
N  86    V  A197
F  87    V  A198
W  88    Q  A199
A  89    G  A200
N  90    E  A201
V  91    S  A202
R  92    G  A203
I  93    G  A204
S  94    G  A205
A  95    N  A206
D  96    L  A207
I  97    A  A208
W  98    I  A209
G  99    A  A210
Q  100    T  A211
S  101    T  A212
I  102    L  A213
N  103    L  A214
I  104    A  A215
Y  105    K  A216
G  106    R  A217
D  107    R  A218
T  108    G  A219
K  109    R  A220
L  110    L  A221
T  111    D  A222
M  112    A  A223
D  113    I  A224
V  114    D  A225
I  115    G  A226
A  116    V  A227
P  117    Y  A228
T  118    A  A229
P  119    S  A230
V  120    I  A231
N  121    P  A232
V  122    Y  A233
S  123    I  A234
I  124    S  A235
A  125    G  A236
A  126    G  A237
I  127    Y  A238
P  128    A  A239
Q  129    W  A240
S  130    D  A241
S  131    H  A242
T  132    E  A243
H  133    R  A244
G  134    R  A245
W  135    L  A246
G  136    T  A247
N  137    E  A248
P  138    L  A249
T  139    P  A250
R  140    S  A251
A  141    L  A252
R  142    V  A253
I  143    E  A254
V  144    N  A255
W  145    D  A256
T  146    G  A257
N  147    Y  A258
N  148    F  A259
F  149    I  A260
V  150    E  A261
A  151    N  A262
Q  152    G  A263
T  153    G  A264
D  154    M  A265
G  155    A  A266
T  156    L  A267
Y  157    L  A268
K  158    V  A269
A  159    R  A270
T  160    A  A271
L  161    Y  A272
T  162    D  A273
I  163    P  A274
S  164    T  A275
T  165    G  A276
N  166    E  A277
D  167    H  A278
S  168    A  A279
P  169    E  A280
N  170    D  A281
F  171    P  A282
N  172    I  A283
T  173    A  A284
I  174    W  A285
A  175    P  A286
T  176    Y  A287
D  177    F  A288
A  178    A  A289
A  179    S  A290
D  180    E  A291
S  181    D  A292
V  182    E  A293
V  183    L  A294
T  184    R  A295
N  185    G  A296
M  186    L  A297
I  187    P  A298
L  188    P  A299
F  189    F  A300
V  190    V  A301
G  191    V  A302
S  192    A  A303
N  193    V  A304
S  194    N  A305
D  195    E  A306
N  196    L  A307
I  197    D  A308
S  198    P  A309
L  199    L  A310
D  200    R  A311
N  201    D  A312
I  202    E  A313
K  203    G  A314
F  204    I  A315
T  205    A  A316
K  206    F  A317
TER
END


