
PFRMAT AL
TARGET T0108
AUTHOR 5505-7671-7042
REMARK 
REMARK It seems that t0108 consists of two similar domains.
REMARK 
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1ncb_H
Q   6    Q   3
Y   7    L   4
V   8    V   5
R   9    S   7
A  10    G   8
R  11    P   9
I  12    E  10
K  13    L  11
G  14    K  12
A  15    K  13
Y  16    P  14
Y  17    G  15
A  18    E  16
T  19    T  17
P  23    K  19
V  24    I  20
T  25    S  21
N  26    C  22
Q  27    K  23
P  28    A  24
T  29    S  25
A  30    G  26
P  31    Y  27
K  32    T  28
D  33    F  29
F  34    T  30
S  35    N  31
S  36    Y  32
G  37    G  33
F  38    M  34
W  39    N  35
D  40    W  36
F  41    V  37
N  42    K  38
D  43    Q  39
G  44    A  40
T  46    L  45
Q  47    E  46
G  48    W  47
F  49    M  48
G  50    G  49
V  51    W  50
N  52    I  51
P  53    N  52
D  54    N  53
T  58    E  56
A  59    P  57
I  60    T  58
N  61    Y  59
V  62    G  60
E  63    E  61
N  64    E  62
A  65    F  63
L  69    F  67
K  70    A  68
I  71    F  69
S  72    S  70
N  73    L  71
L  74    E  72
N  75    T  73
S  76    S  74
K  77    A  75
G  78    S  76
S  79    T  77
N  80    A  78
D  81    N  79
L  82    L  80
S  83    Q  81
E  84    I  82
G  85    K  83
N  86    N  84
TER
PARENT 1ncb_H
I 104    T 110
Y 105    V 111
G 106    S 112
D 107    S 113
T 108    A 114
K 109    K 115
L 110    T 116
T 111    T 117
M 112    A 118
D 113    P 119
V 114    S 120
I 115    V 121
A 116    Y 122
P 117    P 123
T 118    L 124
P 119    P 126
A 125    S 136
A 126    S 137
I 127    V 138
P 128    T 139
Q 129    L 140
S 130    G 141
S 131    C 142
T 132    L 143
H 133    V 144
G 134    K 145
W 135    G 146
G 136    Y 147
N 137    F 148
P 138    P 149
T 139    E 150
R 140    P 151
A 141    V 152
R 142    T 153
I 143    L 154
V 144    T 156
W 145    W 157
T 156    V 171
Y 157    H 172
K 158    T 173
A 159    F 174
T 160    P 175
L 161    A 176
T 162    V 177
I 163    L 178
S 164    Q 179
T 165    S 180
N 166    D 183
D 167    L 184
S 168    Y 185
P 169    T 186
N 170    L 187
F 171    S 188
N 172    S 189
T 173    S 190
I 174    V 191
A 175    T 192
T 176    V 193
D 177    T 194
T 184    Q 203
N 185    S 204
M 186    I 205
I 187    T 206
L 188    C 208
F 189    N 209
V 190    V 210
G 191    A 211
S 192    H 212
N 193    P 213
S 194    A 214
D 195    S 215
N 196    S 216
I 197    T 217
S 198    K 218
L 199    V 219
D 200    D 220
N 201    K 221
I 202    K 222
K 203    I 223
F 204    E 224
TER
END


