
PFRMAT AL
TARGET T0108
AUTHOR 3995-5176-6362
METHOD Chandonia & Cohen, mostly unpublished.
METHOD Uses a combination of PSI-BLAST scoring matrix
METHOD and Pred2ary secondary structure prediction.
METHOD Pred2ary page is http://www.cmpharm.ucsf.edu/~jmc/pred2ary/
METHOD The potential is documented in the paper by
METHOD Schwartz et al which is referenced on
METHOD my research page: http://www.cmpharm.ucsf.edu/~jmc/research.html
MODEL 1
PARENT 1cq3_A
M 1 S 1
G 2 F 2
A 3 S 3
S 4 S 4
G 5 S 5
Q 6 E 10
Y 7 E 11
V 8 E 12
R 9 N 13
A 10 K 14
R 11 H 15
I 12 H 16
K 13 M 17
G 14 G 18
A 15 I 19
Y 16 D 20
Y 17 V 21
A 18 I 22
T 19 I 23
P 20 K 24
V 21 V 25
D 22 T 26
P 23 K 27
V 24 Q 28
T 25 D 29
N 26 Q 30
Q 27 T 31
P 28 P 32
T 29 T 33
A 30 N 34
K 32 D 35
D 33 K 36
F 34 I 37
S 35 C 38
S 36 Q 39
G 37 S 40
F 38 V 41
W 39 T 42
D 40 E 43
F 41 V 44
N 42 T 45
D 43 E 46
G 44 S 47
T 45 V 54
T 46 V 55
Q 47 K 56
G 48 G 57
S 55 D 58
P 56 P 59
I 57 T 60
T 58 T 61
A 59 Y 62
I 60 Y 63
N 61 T 64
V 62 V 65
E 63 V 66
N 64 G 67
A 65 G 68
N 66 G 69
N 67 L 70
A 68 T 71
L 69 M 72
K 70 D 73
I 71 F 74
S 72 G 75
N 73 F 76
L 74 T 77
N 75 K 78
S 76 C 79
K 77 P 80
G 78 K 81
S 79 I 82
N 80 S 83
D 81 S 84
L 82 I 85
S 83 S 86
E 84 E 87
G 85 G 91
N 86 N 92
W 88 T 93
A 89 V 94
N 90 N 95
V 91 A 96
R 92 R 97
I 93 L 98
S 94 S 99
A 95 S 100
D 96 V 101
I 97 S 102
W 98 P 103
G 99 G 104
Q 100 Q 105
S 101 G 106
I 102 K 107
N 103 D 108
I 104 S 109
Y 105 P 110
G 106 A 111
D 107 I 112
T 108 T 113
K 109 E 125
L 110 M 126
T 111 S 127
M 112 I 128
D 113 N 129
V 114 I 130
I 115 K 131
A 116 C 132
P 117 S 133
T 118 E 134
P 119 E 135
V 120 E 136
N 121 K 137
V 122 D 138
S 123 S 139
I 124 N 140
A 125 I 141
A 126 K 142
I 127 T 143
P 128 H 144
Q 129 P 145
S 130 V 146
S 131 L 147
T 132 G 148
H 133 S 149
G 134 N 150
W 135 I 151
G 136 S 152
N 137 H 153
P 138 K 154
T 139 K 155
R 140 V 156
A 141 S 157
R 142 Y 158
I 143 E 159
V 144 D 160
W 145 I 161
T 146 I 162
N 147 G 163
N 148 S 164
F 149 T 165
V 150 I 166
A 151 V 167
Q 152 D 168
T 153 T 169
D 154 K 170
G 155 C 171
T 156 V 172
Y 157 K 173
K 158 N 174
A 159 L 175
T 160 E 176
L 161 I 177
T 162 S 178
I 163 V 179
S 164 R 180
T 165 I 181
N 166 G 182
D 167 D 183
S 168 M 184
I 174 C 185
A 175 K 186
T 176 E 187
D 177 S 188
A 178 S 189
A 179 E 190
D 180 L 191
S 181 E 192
V 182 V 193
V 183 K 194
T 184 D 195
N 185 G 196
M 186 F 197
I 187 K 198
L 188 Y 199
F 189 V 200
V 190 D 201
G 191 G 202
S 192 S 203
N 193 D 211
S 194 T 212
D 195 S 213
N 196 L 214
I 197 I 215
S 198 N 216
L 199 S 217
D 200 A 218
N 201 K 219
I 202 L 220
K 203 I 221
F 204 A 222
T 205 C 223
K 206 V 224
TER
END

