
PFRMAT AL
TARGET T0108
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1wba
A   18 D 2
T   19 D 3
P   20 P 4
V   21 V 5
D   22 Y 6
P   23 D 7
V   24 A 8
T   25 E 9
N   26 G 10
Q   27 N 11
P   28 K 12
T   29 L 13
A   30 V 14
P   31 N 15
D   33 R 16
F   34 G 17
S   35 K 18
S   36 Y 19
G   37 T 20
F   38 I 21
W   39 V 22
D   40 S 23
F   41 F 24
N   42 S 25
D   43 D 26
G   44 G 27
T   45 A 28
T   46 A 34
Q   47 T 35
G   48 G 36
G   50 N 37
V   51 E 38
N   52 N 39
P   53 P 40
D   54 E 41
S   55 D 42
P   56 P 43
I   57 L 44
A   59 S 45
I   60 I 46
V   62 V 47
E   63 K 48
N   64 S 49
A   65 T 50
N   66 R 51
N   67 N 52
A   68 I 53
L   69 M 54
K   70 Y 55
I   71 A 56
S   72 T 57
N   73 S 58
L   74 I 59
N   75 S 60
S   76 S 61
K   77 E 62
G   78 D 63
S   79 K 64
N   80 T 65
D   81 P 66
L   82 P 67
S   83 Q 68
E   84 P 69
G   85 R 70
N   86 N 71
F   87 I 72
W   88 L 73
A   89 E 74
N   90 N 75
V   91 M 76
R   92 R 77
I   93 L 78
S   94 K 79
A   95 I 80
D   96 N 81
Q  100 F 82
S  101 A 83
I  102 T 84
N  103 D 85
I  104 P 86
Y  105 H 87
G  106 K 88
D  107 G 89
T  108 D 90
T  111 V 91
M  112 W 92
D  113 S 93
V  114 V 94
I  115 V 95
A  116 D 96
P  117 F 97
T  118 Q 98
P  119 P 99
V  120 D 100
N  121 G 101
V  122 Q 102
S  123 Q 103
I  124 L 104
A  125 K 105
A  126 L 106
I  127 A 107
P  128 G 108
Q  129 R 109
S  130 Y 110
S  131 P 111
T  132 N 112
H  133 Q 113
P  138 V 114
T  139 K 115
R  140 G 116
A  141 A 117
R  142 F 118
I  143 T 119
V  144 I 120
W  145 Q 121
T  146 K 122
N  147 G 123
N  148 S 124
F  149 N 125
T  153 T 126
D  154 P 127
G  155 R 128
T  156 T 129
Y  157 Y 130
K  158 K 131
A  159 L 132
T  160 L 133
L  161 F 134
T  162 C 135
I  163 P 136
S  164 V 137
T  165 G 138
N  166 S 139
D  167 P 140
S  168 C 141
P  169 K 142
N  170 N 143
F  171 I 144
T  173 G 145
I  174 I 146
A  175 S 147
T  176 T 148
D  177 D 149
A  178 P 150
A  179 E 151
D  180 G 152
S  181 K 153
V  182 K 154
N  185 R 155
M  186 L 156
I  187 V 157
L  188 V 158
F  189 S 159
V  190 Y 160
G  191 Q 161
S  192 S 162
N  193 D 163
S  194 P 164
D  195 L 165
N  196 V 166
I  197 V 167
S  198 K 168
L  199 F 169
D  200 H 170
N  201 R 171
I  202 H 172
TER
END

