
PFRMAT AL
TARGET T0107
AUTHOR 7023-8870-2129
METHOD I did a simple PSI-blast search with the full sequence for this protein.
METHOD When comparing the profile back against scop, one identifies what looks
METHOD looks like a good candidate that is an Ig-type fold:
METHOD 
METHOD 1tixa.3.1.7.3.17 Xylanase A, catalytic core {Thermoascus aurant...   380  e-106
METHOD 1b30a.3.1.7.3.15 Xylanase A, catalytic core {Penicillium simpli...   375  e-105
METHOD 1bg4.3.1.7.3.2 Xylanase {Penicillium simplicissimum}                 375  e-105
METHOD 1xyza.3.1.7.3.1 Xylanase {Clostridium thermocellum, XynZ}            371  e-104
METHOD 1xas.3.1.7.3.14 Xylanase A, catalytic core {Streptomyces lividans}   361  e-100
METHOD 1exp.3.1.7.3.4 beta-1,4-glycanase Cex, catalytic domain {Cellul...   334  1e-92
METHOD 1clxa.3.1.7.3.16 Xylanase A, catalytic core {Pseudomonas fluore...   319  4e-88
METHOD 1nbca.2.2.2.2.1 Cellusomal scaffolding protein A, scafoldin {Cl...   112  8e-26
METHOD 1ulo.2.16.1.5.1 Cellulose-binding domain {Cellulomonas fimi}          82  1e-16
METHOD 1epne.2.44.1.2.1 Endothiapepsin {Chestnut blight fungus (Endoth...    40  5e-04
METHOD 1b90a.3.1.7.2.3 (1-417) Bacterial beta-amylase, catalytic domai...    39  9e-04
METHOD 
METHOD Note that 1nbca is the only hit at the C-terminus, where the target is.
METHOD 
METHOD I have done the usual thing of aligning close homologues of the domain, merged
METHOD this with the PSI-blast alignment + secondary structure predictions and STAMP
METHOD alignments of known structure. There were a few minor changes I have made 
METHOD mostly to the C-terminal regions. -Rob 
MODEL 1
PARENT 1nbcA
K  42    N   1
V  43    L   2
R  44    K   3
V  45    V   4
L  46    E   5
W  47    F   6
D  48    Y   7
E  49    N   8
N  50    S   9
Y  51    N  10
L  52    P  11
Y  53    S  12
V  54    D  13
L  55    T  14
A  56    T  15
I  57    N  16
V  58    S  17
K  59    I  18
D  60    N  19
P  61    P  20
V  62    Q  21
L  63    F  22
N  64    K  23
K  65    V  24
Q  73    T  25
D  74    N  26
S  75    T  27
V  76    G  28
E  77    S  29
I  78    S  30
F  79    A  31
I  80    I  32
D  81    D  33
E  82    L  34
N  83    S  35
N  84    K  36
H  85    L  37
K  86    T  38
T  87    L  39
G  88    R  40
Y  89    Y  41
Y  90    Y  42
E  91    Y  43
D  92    T  44
D  93    V  45
D  94    D  46
A  95    G  47
Q  96    Q  48
F  97    K  49
R  98    D  50
V  99    Q  51
N 100    T  52
Y 101    F  53
M 102    D  56
N 103    H  57
E 104    A  58
Q 105    A  59
T 106    I  60
F 107    I  61
G 108    G  62
T 109    T  71
G 110    S  72
G 111    N  73
S 112    V  74
P 113    K  75
A 114    G  76
R 115    T  77
F 116    F  78
K 117    V  79
T 118    K  80
A 119    S  82
V 120    S  83
K 121    S  84
L 122    T  85
I 123    N  86
E 124    N  87
G 125    A  88
G 126    D  89
Y 127    T  90
I 128    Y  91
V 129    L  92
E 130    E  93
A 131    I  94
A 132    S  95
I 133    F  96
K 134    T  97
W 135    G  98
K 136    G  99
I 138    L 101
K 139    E 102
P 140    P 103
T 141    G 104
P 142    A 105
N 143    H 106
T 144    V 107
V 145    Q 108
I 146    I 109
G 147    Q 110
F 148    G 111
N 149    R 112
I 150    F 113
Q 151    A 114
V 152    K 115
N 153    N 116
D 154    D 117
A 155    W 118
N 156    S 119
E 157    N 120
K 158    Q 123
G 159    S 124
Q 160    N 125
R 161    D 126
V 162    Y 127
G 163    S 128
I 164    F 129
I 165    K 130
S 166    S 131
W 167    A 132
S 168    S 133
D 169    Q 134
P 170    F 135
T 171    V 136
N 172    E 137
N 173    W 138
S 174    D 139
W 175    Q 140
R 176    V 141
D 177    T 142
P 178    A 143
S 179    Y 144
K 180    L 145
F 181    N 146
G 182    G 147
N 183    V 148
L 184    L 149
R 185    V 150
L 186    W 151
I 187    G 152
K 188    K 153
TER
END

