
PFRMAT AL
TARGET T0107
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 3seb
D  16    D 127
E  17    K 128
I  18    Y 129
W  19    R 130
N  20    S 131
T  21    I 132
T  22    T 133
E  23    V 134
E  24    R 135
I  25    V 136
E  26    F 137
R  27    E 138
K  28    D 139
A  29    G 140
V  30    K 141
A  31    N 142
M  32    L 143
G  33    L 144
S  34    S 145
L  35    F 146
D  36    D 147
K  37    V 148
N  38    Q 149
A  39    T 150
T  40    N 151
A  41    K 152
K  42    K 153
V  43    K 154
R  44    V 155
V  45    T 156
L  46    A 157
W  47    Q 158
D  48    E 159
E  49    L 160
N  50    D 161
Y  51    Y 162
L  52    L 163
Y  53    T 164
V  54    R 165
L  55    H 166
A  56    Y 167
I  57    L 168
V  58    V 169
K  59    K 170
D  60    N 171
P  61    K 172
V  62    K 173
L  63    L 174
N  64    Y 175
K  65    E 176
D  66    F 177
N  67    N 178
S  68    N 179
N  69    S 180
P  70    P 181
W  71    Y 182
E  72    E 183
Q  73    T 184
D  74    G 185
S  75    Y 186
V  76    I 187
E  77    K 188
I  78    F 189
F  79    I 190
I  80    E 191
D  81    N 192
E  82    E 193
N  83    N 194
N  84    S 195
TER
END


