
PFRMAT AL
TARGET T0107
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1kiq_B
W  47    W  52
D  48    D  54
E  49    G  55
N  50    N  56
Y  51    T  57
L  52    D  58
Y  53    Y  59
V  54    N  60
L  55    S  61
A  56    A  62
I  57    L  63
V  58    K  64
K  59    S  65
D  60    R  66
P  61    L  67
V  62    S  68
L  63    I  69
N  64    S  70
K  65    K  71
D  66    D  72
N  67    N  73
S  68    S  74
N  69    K  75
P  70    S  76
E  77    Q  77
I  78    V  78
F  79    F  79
I  80    L  80
D  81    K  81
E  82    M  82
N  83    N  83
N  84    S  84
H  85    L  85
K  86    H  86
T  87    T  87
G  88    D  88
Y  89    Y  93
Y  90    Y  94
E  91    C  95
D  92    A  96
D  93    R  97
D  94    E  98
A  95    R  99
Q  96    D 100
F  97    F 101
R  98    R 102
V  99    L 103
N 100    D 104
Y 101    Y 105
M 102    W 106
N 103    G 107
E 104    Q 108
Q 105    G 109
T 106    T 110
F 107    T 111
TER
END


