
PFRMAT AL
TARGET T0107
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1xas
G 108    F 208
T 109    N 209
G 110    S 210
G 111    G 211
S 112    S 212
P 113    P 213
A 114    S 216
R 115    N 217
F 116    F 218
K 117    R 219
T 118    T 220
A 119    T 221
V 120    L 222
K 121    Q 223
L 122    N 224
I 123    F 225
G 125    A 226
G 126    A 227
Y 127    L 228
I 128    G 229
V 129    V 230
E 130    D 231
A 131    V 232
A 132    A 233
I 133    I 234
K 134    T 235
W 135    E 236
K 136    L 237
T 137    D 238
I 138    I 239
K 139    Q 240
P 140    G 241
T 141    A 242
P 142    P 243
N 143    A 244
T 144    S 245
V 145    T 246
I 146    Y 247
G 147    A 248
N 149    N 249
I 150    V 250
V 152    T 251
N 153    N 252
D 154    D 253
A 155    C 254
G 159    S 258
Q 160    R 259
R 161    C 260
V 162    L 261
G 163    G 262
I 164    I 263
I 165    T 264
S 166    V 265
W 167    W 266
S 168    G 267
D 169    V 268
P 170    R 269
T 171    D 270
N 172    S 271
N 173    D 272
S 174    S 273
W 175    W 274
R 176    R 275
D 177    S 276
P 178    P 280
S 179    L 281
K 180    L 282
F 181    F 283
G 182    N 284
N 183    N 285
TER
END


