
PFRMAT AL
TARGET T0107
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1jlx_A
T  40    T  64
A  41    N  65
K  42    K  66
V  43    Y  67
R  44    L  68
V  45    V  69
L  46    R  70
W  47    W  71
D  48    S  72
E  49    P  73
N  50    N  74
Y  51    H  75
L  52    Y  76
Y  53    W  77
V  54    I  78
L  55    T  79
A  56    A  80
I  57    S  81
V  58    A  82
K  59    N  83
D  60    E  84
P  61    P  85
V  62    D  86
L  63    E  87
N  64    N  88
K  65    K  89
D  66    S  90
N  67    N  91
I  78    L 100
F  79    Y 101
I  80    V 102
D  81    E 103
E  82    E 104
N  83    G 105
N  84    N 106
H  85    M 107
K  86    K 108
T  87    K 109
G  88    V 110
Y  89    R 111
Y  90    L 112
Q  96    H 114
F  97    V 115
R  98    Q 116
V  99    L 117
N 100    G 118
Y 101    H 119
M 102    Y 120
N 103    T 121
Q 105    Q 122
T 106    N 123
F 107    Y 124
G 108    T 125
T 109    V 126
G 110    G 127
G 111    G 128
S 112    S 129
P 113    F 130
A 114    V 131
R 115    S 132
F 116    F 135
K 117    A 136
T 118    E 137
A 119    S 138
V 120    S 139
K 121    Q 140
L 122    I 141
I 123    D 142
E 124    T 143
G 125    G 144
G 126    S 145
Y 127    K 146
I 128    D 147
V 129    V 148
TER
END


