
PFRMAT AL
TARGET T0107
AUTHOR 6305-9733-7289
REMARK similar to 1kac (chain: A).
METHOD Inspection of the top 3D-PSSM (Kelley et al., J. Mol. Biol. 299, 501-522, 2000) hits,
METHOD considering structural and funtional aspects. The sequence of 1kac (chain: A) was aligned
METHOD to a sequence profile constructed for the target sequences with clustalw. For construction
METHOD of this profile, sequences found by PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402,
METHOD 1997) in a combined search set comprising the SWALL, PDB and ENSEMBL sequence databases
METHOD have been used.
METHOD
METHOD The final pairwise sequence-structure alignment was edited by hand, based on the secondary
METHOD structure in 1kac (chain: A) and based on the secondary structure predicted for the target
METHOD by JPred2 (Cuff & Barton, Proteins 40, 502-511, 2000).
MODEL  1
PARENT 1kac_A
I 11 T A403
D 12 P A404
G 13 Y A405
E 14 D A406
I 15 P A407
D 16 L A408
E 17 T A409
I 18 L A410
W 19 W A411
N 20 T A412
T 21 T A413
T 22 P A414
E 23 D A415
E 24 P A416
I 25 P A417
E 26 P A418
R 27 N A419
A 29 C A420
V 30 S A421
A 31 L A422
M 32 I A423
G 33 Q A424
S 34 E A425
L 35 L A426
D 36 D A427
K 37 A A428
N 38 K A429
A 39 L A430
T 40 T A431
A 41 L A432
K 42 C A433
V 43 L A434
R 44 T A435
V 45 K A436
L 46 N A437
E 49 V A441
N 50 N A442
Y 51 G A443
L 52 I A444
Y 53 V A445
V 54 S A446
L 55 L A447
A 56 V A448
I 57 G A449
V 58 V A450
K 59 K A451
D 60 G A452
P 61 N A453
V 62 L A454
L 63 L A455
N 64 N A456
K 65 I A457
Q 73 T A463
D 74 V A464
S 75 G A465
V 76 V A466
E 77 H A467
I 78 L A468
F 79 V A469
I 80 F A470
D 81 D A471
E 82 E A472
N 83 Q A473
N 84 G A474
H 85 R A475
K 86 L A476
T 87 I A477
G 88 T A478
F 97 T A482
R 98 A A483
V 99 L A484
N 100 V A485
Y 101 P A486
M 102 Q A487
N 103 A A488
E 104 S A489
Q 105 W A490
T 106 G A491
F 107 Y A492
G 108 R A493
T 109 Q A494
G 110 G A495
G 111 Q A496
S 112 S A497
P 113 V A498
A 114 S A499
E 130 S A526
A 131 Q A527
A 132 M A528
I 133 V A529
K 134 S A530
W 135 L A531
K 136 T A532
T 137 Y A533
I 138 L A534
K 139 Q A535
P 140 G A536
T 141 D A537
P 142 T A538
N 143 S A539
T 144 K A540
V 145 P A541
I 146 I A542
G 147 T A543
F 148 M A544
N 149 K A545
I 150 V A546
Q 151 A A547
V 152 F A548
N 153 N A549
D 154 G A550
A 155 I A551
N 156 T A552
E 157 S A553
K 158 L A554
G 159 N A555
Q 160 G A556
R 161 Y A557
V 162 S A558
G 163 L A559
I 164 T A560
I 165 F A561
S 166 M A562
W 167 W A563
S 168 S A564
D 169 G A565
D 177 T A576
P 178 P A577
S 179 S A578
K 180 C A579
F 181 S A580
G 182 F A581
N 183 S A582
L 184 Y A583
R 185 I A584
L 186 T A585
I 187 Q A586
K 188 E A587
TER
END


