
PFRMAT AL
TARGET T0107
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.75 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1nkd
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1nkd
G  33     M     1
S  34     T     2
L  35     K     3
D  36     Q     4
K  37     E     5
N  38     K     6
A  39     T     7
T  40     A     8
A  41     L     9
K  42     N    10
V  43     M    11
R  44     A    12
V  45     R    13
L  46     F    14
W  47     I    15
D  48     R    16
E  49     S    17
N  50     Q    18
Y  51     T    19
L  52     L    20
Y  53     T    21
V  54     L    22
L  55     L    23
A  56     E    24
I  57     K    25
V  58     L    26
K  59     N    27
D  60     E    28
P  61     L    29
N  69     A    30
P  70     D    31
W  71     A    32
E  72     A    33
Q  73     D    34
D  74     E    35
S  75     Q    36
V  76     A    37
E  77     D    38
I  78     I    39
F  79     C    40
I  80     E    41
D  81     S    42
E  82     L    43
N  83     H    44
N  84     D    45
H  85     H    46
K  86     A    47
T  87     D    48
G  88     E    49
Y  89     L    50
Y  90     Y    51
E  91     R    52
D  92     S    53
D  93     C    54
D  94     L    55
A  95     A    56
Q  96     R    57
F  97     F    58
R  98     G    59
TER
END

