
PFRMAT SS
TARGET T0106
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
A C 0.89
A C 0.89
C C 0.89
E C 0.78
P C 0.78
V C 0.67
R C 0.67
I C 0.67
P C 0.67
L C 0.78
C C 0.67
K C 0.78
S C 0.67
L C 0.67
P C 0.78
W C 0.89
E C 0.78
M C 0.89
T C 0.89
K C 0.89
M C 0.89
P C 0.89
N C 0.78
H C 0.56
L C 0.67
H C 0.78
H C 0.78
S C 0.89
T C 0.89
Q H 0.89
A H 0.89
N H 0.89
A H 0.89
I H 0.89
L H 0.89
A H 0.89
M H 0.78
E H 0.67
Q H 0.56
F C 0.67
E C 0.78
G H 0.67
L H 0.67
L H 0.67
G H 0.56
T C 0.67
H C 0.78
C C 0.78
S C 0.89
P C 0.78
D C 0.67
L H 0.78
L H 0.89
F H 0.89
F H 0.89
L H 0.89
C H 0.78
A H 0.78
M C 0.78
Y C 0.67
A C 0.78
P C 0.89
I C 0.78
C C 0.89
T C 0.89
I C 0.89
D C 0.89
F C 0.67
Q H 0.56
H C 0.89
E C 0.89
P C 0.89
I C 0.89
K C 0.89
P C 0.89
C C 0.78
K C 0.78
S H 0.78
V H 1.00
C H 1.00
E H 0.89
R H 0.89
A H 0.89
R H 0.78
Q H 0.67
G H 0.67
C C 0.67
E H 0.89
P H 0.89
I H 0.89
L H 0.89
I H 0.89
K H 0.78
Y C 0.67
R C 1.00
H C 1.00
S C 0.89
W C 0.89
P C 0.78
E C 0.78
S C 0.67
L C 0.67
A C 0.67
C C 0.67
D C 0.78
E C 0.78
L C 0.78
P C 0.89
V C 0.89
Y C 0.89
D C 0.89
R C 0.89
G C 0.78
V C 0.67
C E 0.67
I C 0.67
S C 0.78
P C 0.89
E C 0.89
A C 0.89
I C 0.78
V C 0.78
T C 0.78
A C 0.89
D C 1.00
G C 0.89
A C 0.78
D C 0.67
END


