
PFRMAT AL
TARGET T0106
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 2occ_E
H   27 H 5
S   28 E 6
T   29 T 7
Q   30 D 8
A   31 E 9
N   32 E 10
A   33 F 11
I   34 D 12
L   35 A 13
A   36 R 14
M   37 W 15
E   38 V 16
Q   39 T 17
F   40 Y 18
E   41 F 19
G   42 N 20
L   43 K 21
L   44 P 22
G   45 D 23
T   46 I 24
H   47 D 25
C   48 A 26
S   49 W 27
P   50 E 28
D   51 L 29
L   52 R 30
L   53 K 31
F   54 G 32
F   55 M 33
L   56 N 34
C   57 T 35
A   58 L 36
M   59 V 37
Y   60 Y 39
A   61 D 40
P   62 L 41
I   63 V 42
C   64 P 43
T   65 E 44
I   66 P 45
D   67 K 46
F   68 I 47
Q   69 I 48
H   70 D 49
E   71 A 50
P   72 A 51
I   73 L 52
K   74 R 53
P   75 A 54
C   76 C 55
K   77 R 56
S   78 R 57
V   79 L 58
C   80 L 68
E   81 E 69
R   82 V 70
A   83 V 71
R   84 K 72
Q   85 Q 87
G   86 E 88
C   87 L 89
E   88 R 90
P   89 P 91
I   90 T 92
L   91 L 93
I   92 N 94
K   93 E 95
Y   94 L 96
R   95 G 97
H   96 I 98
S   97 S 99
W   98 T 100
P   99 P 101
E  100 E 102
S  101 E 103
L  102 L 104
A  103 G 105
C  104 L 106
D  105 D 107
E  106 K 108
L  107 V 109
TER
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