
PFRMAT AL
TARGET T0106
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1dug_A
M   21 L 81
P   22 G 82
N   23 G 83
H   24 C 84
L   25 I 108
H   26 A 109
H   27 Y 110
S   28 S 111
T   29 K 112
Q   30 D 113
A   31 F 114
N   32 K 124
A   33 L 125
I   34 P 126
L   35 E 127
A   36 M 128
M   37 L 129
E   38 K 130
Q   39 M 131
F   40 F 132
E   41 E 133
G   42 D 134
L   43 R 135
L   44 L 136
G   45 G 144
T   46 D 145
H   47 H 146
C   48 V 147
S   49 T 148
P   50 P 150
D   51 D 151
L   52 F 152
L   53 M 153
F   54 L 154
F   55 Y 155
L   56 D 156
C   57 A 157
A   58 L 158
M   59 D 159
Y   60 V 160
A   61 V 161
P   62 L 162
I   63 Y 163
C   64 M 164
T   65 D 165
I   66 P 166
D   67 M 167
F   68 C 168
Q   69 L 169
E   71 D 170
P   72 A 171
I   73 F 172
K   74 P 173
P   75 K 174
C   76 L 175
K   77 V 176
S   78 C 177
V   79 F 178
C   80 K 179
E   81 K 180
R   82 R 181
A   83 A 184
R   84 I 185
Q   85 P 186
G   86 Q 187
C   87 I 188
E   88 D 189
P   89 K 190
I   90 Y 191
L   91 L 192
I   92 A 199
K   93 W 200
Y   94 P 201
R   95 L 202
H   96 Q 203
S   97 G 204
W   98 W 205
P   99 Q 206
E  100 A 207
S  101 T 208
L  102 F 209
A  103 G 210
C  104 G 212
D  105 D 213
E  106 H 214
L  107 P 215
P  108 P 216
V  109 K 217
Y  110 S 218
D  111 D 219
R  112 P 220
G  113 Q 221
V  114 Q 222
C  115 H 223
I  116 H 224
S  117 L 225
P  118 G 226
E  119 G 227
A  120 A 228
I  121 K 229
V  122 Q 230
T  123 A 231
A  124 G 232
D  125 D 233
G  126 V 234
TER
END

