
PFRMAT AL
TARGET T0106
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.97 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1doqa
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1doq_A
A   1     E   247
A   2     Q   248
C   3     E   249
E   4     E   250
P   5     E   251
V   6     L   252
S  13     D   253
L  14     L   254
P  15     P   255
W  16     L   256
E  17     E   257
M  18     E   258
T  19     L   259
K  20     G   260
M  21     L   261
P  22     S   262
N  23     T   263
H  24     R   264
L  25     V   265
H  26     L   266
H  27     H   267
S  28     S   268
T  29     L   269
Q  30     K   270
A  31     E   271
N  32     E   272
A  33     G   273
I  34     I   274
L  35     E   275
A  36     S   276
M  37     V   277
E  38     R   278
Q  39     A   279
F  40     L   280
E  41     L   281
G  42     A   282
L  43     L   283
Q  69     N   284
H  70     L   285
E  71     K   286
P  72     D   287
I  73     L   288
K  74     K   289
P  75     N   290
C  76     I   291
K  77     P   292
S  78     G   293
V  79     I   294
C  80     G   295
E  81     E   296
R  82     R   297
A  83     S   298
R  84     L   299
Q  85     E   300
G  86     E   301
C  87     I   302
E  88     K   303
P  89     E   304
I  90     A   305
L  91     L   306
I  92     E   307
K  93     K   308
Y  94     K   309
R  95     G   310
H  96     F   311
S  97     T   312
W  98     L   313
P  99     K   314
E 100     E   315
TER
END

