
PFRMAT SS
TARGET T0104
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.99
E C 0.70
S C 0.08
L E 0.76
T E 0.85
Q E 0.92
Y E 0.73
I C 0.07
P C 0.90
D C 0.93
E H 0.86
F H 0.91
S H 0.93
M H 0.93
L H 0.95
R H 0.96
F H 0.97
G H 0.96
K H 0.96
K H 0.96
F H 0.96
A H 0.96
E H 0.95
I H 0.90
L H 0.83
L H 0.43
K H 0.22
L C 0.60
H C 0.83
T C 0.85
E C 0.89
K C 0.88
A C 0.73
I E 0.20
M E 0.84
V E 0.93
Y E 0.95
L E 0.93
N E 0.50
G C 0.45
D C 0.72
L C 0.77
G C 0.76
A C 0.66
G C 0.85
K H 0.75
T H 0.91
T H 0.94
L H 0.95
T H 0.96
R H 0.95
G H 0.97
M H 0.97
L H 0.95
Q H 0.92
G H 0.72
I C 0.15
G C 0.90
H C 0.88
Q C 0.83
G C 0.42
N C 0.30
V C 0.07
K C 0.71
S C 0.81
P C 0.86
T C 0.52
Y E 0.62
T E 0.77
L E 0.52
V E 0.82
E E 0.78
E E 0.66
Y E 0.22
N C 0.71
I C 0.90
A C 0.82
G C 0.90
K C 0.36
M E 0.39
I E 0.89
Y E 0.95
H E 0.93
F E 0.71
D E 0.89
L E 0.83
Y E 0.76
R E 0.42
L C 0.07
A C 0.88
D C 0.88
P H 0.61
E H 0.62
E H 0.49
L H 0.44
E H 0.61
F H 0.39
M C 0.03
G C 0.62
I H 0.40
R H 0.81
D H 0.80
Y H 0.83
F H 0.45
N H 0.06
T C 0.82
D C 0.93
S C 0.73
I E 0.78
C E 0.97
L E 0.95
I E 0.92
E E 0.76
W E 0.02
S C 0.13
E H 0.07
K H 0.31
G H 0.01
Q C 0.08
G C 0.23
I C 0.07
L C 0.82
P C 0.91
E C 0.70
A C 0.44
D C 0.48
I E 0.50
L E 0.80
V E 0.92
N E 0.94
I E 0.95
D E 0.95
Y E 0.82
Y C 0.15
D C 0.76
D C 0.89
A C 0.89
R C 0.72
N E 0.74
I E 0.95
E E 0.94
L E 0.94
I E 0.91
A E 0.63
Q E 0.32
T C 0.70
N H 0.11
L H 0.47
G H 0.84
K H 0.89
N H 0.93
I H 0.95
I H 0.97
S H 0.93
A H 0.81
F H 0.65
S C 0.12
N C 0.98
END

