
PFRMAT AL
TARGET T0104
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1fsz
F   17 I 232
G   18 N 233
K   19 V 234
K   20 D 235
F   21 F 236
A   22 A 237
E   23 D 238
I   24 V 239
L   25 K 240
L   26 A 241
K   27 V 242
L   28 M 243
H   29 N 244
E   31 N 245
K   32 G 246
A   33 G 247
I   34 L 248
M   35 A 249
V   36 M 250
Y   37 I 251
L   38 G 252
N   39 I 253
G   40 G 254
D   41 E 255
L   42 S 256
G   43 D 257
A   44 S 258
G   45 E 259
K   46 K 260
T   47 K 263
T   48 E 264
L   49 A 265
T   50 V 266
R   51 S 267
G   52 M 268
M   53 A 269
L   54 L 270
Q   55 N 271
G   56 S 272
I   57 P 273
G   58 L 274
H   59 L 275
Q   60 D 276
G   61 V 277
N   62 D 278
V   63 I 279
K   64 D 280
S   65 G 281
P   66 A 282
T   67 T 283
Y   68 G 284
T   69 A 285
L   70 L 286
V   71 I 287
E   72 H 288
E   73 V 289
Y   74 M 290
N   75 G 291
I   76 P 292
A   77 E 293
G   78 D 294
K   79 L 295
M   80 T 296
I   81 L 297
E   93 E 298
E   94 E 299
L   95 A 300
E   96 R 301
F   97 E 302
M   98 V 303
G   99 V 304
I  100 A 305
R  101 T 306
D  102 V 307
Y  103 S 308
F  104 S 309
N  105 R 310
T  106 L 311
D  107 D 312
S  108 P 313
I  109 N 314
C  110 A 315
L  111 T 316
I  112 I 317
E  113 I 318
W  114 W 319
S  115 G 320
E  116 A 321
K  117 T 322
G  118 I 323
Q  119 D 324
G  120 E 325
I  121 N 326
L  122 L 327
E  124 E 328
A  125 N 329
D  126 T 330
I  127 V 331
L  128 R 332
V  129 V 333
N  130 L 334
I  131 L 335
D  132 V 336
Y  133 I 337
Y  134 T 338
D  135 G 339
D  136 V 340
A  137 Q 341
R  138 S 342
N  139 R 343
I  140 I 344
E  141 E 345
L  142 F 346
I  143 T 347
A  144 K 352
Q  145 R 353
T  146 K 354
N  147 K 355
L  148 L 356
TER
END

