
PFRMAT AL
TARGET T0102
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1b67_A
G    6 G 2
I    7 L 4
P    8 P 5
A    9 I 6
A   10 A 7
V   11 P 8
A   12 I 9
G   13 G 10
T   14 R 11
V   15 I 12
L   16 I 13
N   17 K 14
V   18 N 15
V   19 A 16
E   20 G 17
A   21 A 18
G   22 D 23
G   23 D 24
W   24 A 25
V   25 R 26
T   26 I 27
T   27 A 28
I   28 L 29
V   29 A 30
S   30 K 31
I   31 V 32
L   32 L 33
T   33 E 34
A   34 E 35
V   35 M 36
G   36 G 37
S   37 S 42
G   38 E 43
G   39 A 44
L   40 V 45
S   41 K 46
L   42 L 47
L   43 A 48
A   44 K 49
A   45 H 50
A   46 A 51
G   47 G 52
R   48 R 53
E   49 K 54
S   50 T 55
I   51 I 56
K   52 K 57
A   53 A 58
Y   54 E 59
L   55 D 60
K   56 I 61
K   57 E 62
E   58 L 63
I   59 A 64
K   60 R 65
K   61 K 66
K   62 M 67
G   63 F 68
K   64 K 69
TER
END

