
PFRMAT SS
TARGET T0100
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
A C 0.97
T C 0.81
T C 0.61
Y C 0.83
N C 0.87
A E 0.81
V E 0.94
V E 0.85
S E 0.69
K C 0.69
S C 0.75
S C 0.91
S C 0.82
D C 0.93
G C 0.91
K C 0.80
T C 0.80
F E 0.68
K E 0.11
T C 0.54
I H 0.79
A H 0.81
D H 0.85
A H 0.88
I H 0.83
A H 0.72
S H 0.46
A H 0.10
P C 0.11
A C 0.01
G C 0.66
S C 0.88
T C 0.94
P C 0.78
F E 0.76
V E 0.93
I E 0.94
L E 0.96
I E 0.86
K C 0.49
N C 0.80
G C 0.17
V E 0.81
Y E 0.87
N E 0.13
E E 0.77
R E 0.93
L E 0.91
T E 0.94
I E 0.85
T C 0.84
R C 0.95
N C 0.94
N C 0.62
L C 0.25
H E 0.70
L E 0.89
K E 0.68
G C 0.20
E C 0.19
S C 0.80
R C 0.94
N C 0.74
G E 0.27
A E 0.28
V E 0.89
I E 0.93
A E 0.94
A E 0.92
A E 0.78
T E 0.69
A E 0.69
A E 0.56
G E 0.07
T E 0.09
L E 0.17
K C 0.05
S C 0.30
D C 0.61
G C 0.83
S C 0.91
K C 0.90
W C 0.84
G C 0.85
T E 0.78
A E 0.52
G E 0.31
S E 0.53
S E 0.69
T E 0.90
I E 0.95
T E 0.96
I E 0.95
S E 0.78
A C 0.16
K C 0.90
D C 0.86
F C 0.09
S E 0.85
A E 0.94
Q E 0.89
S E 0.59
L E 0.42
T E 0.87
I E 0.92
R E 0.69
N E 0.08
D C 0.20
F C 0.59
D C 0.88
F C 0.89
P C 0.91
A C 0.83
N C 0.83
Q C 0.17
A E 0.11
K E 0.04
S E 0.75
D C 0.91
S C 0.75
D C 0.90
S C 0.85
S C 0.88
K C 0.86
I C 0.89
K C 0.83
D C 0.92
T C 0.88
Q C 0.75
A E 0.74
V E 0.90
A E 0.94
L E 0.97
Y E 0.96
V E 0.96
T E 0.93
K E 0.56
S E 0.39
G C 0.62
D C 0.72
R E 0.54
A E 0.92
Y E 0.93
F E 0.96
K E 0.77
D C 0.19
V C 0.47
S E 0.74
L E 0.91
V E 0.95
G E 0.46
Y E 0.47
Q E 0.78
D E 0.73
T E 0.79
L E 0.86
Y E 0.91
V E 0.74
S C 0.58
G C 0.92
G C 0.83
R E 0.16
S E 0.17
F E 0.87
F E 0.94
S E 0.95
D E 0.08
C C 0.84
R E 0.93
I E 0.93
S E 0.94
G E 0.53
T E 0.49
V E 0.80
D E 0.89
F E 0.93
I E 0.95
F E 0.83
G C 0.88
D C 0.92
G E 0.56
T E 0.84
A E 0.95
L E 0.94
F E 0.81
N E 0.74
N C 0.80
C C 0.87
D E 0.88
L E 0.95
V E 0.93
S E 0.94
R E 0.78
Y C 0.90
R C 0.91
A C 0.90
D C 0.88
V C 0.85
K C 0.86
S C 0.84
G C 0.91
N C 0.78
V E 0.65
S E 0.70
G E 0.90
Y E 0.91
L E 0.84
T C 0.05
A C 0.76
P C 0.91
S C 0.89
T C 0.69
N C 0.92
I C 0.81
N C 0.85
Q C 0.85
K C 0.54
Y C 0.06
G C 0.12
L E 0.77
V E 0.93
I E 0.93
T E 0.93
N C 0.01
S C 0.82
R E 0.87
V E 0.93
I E 0.69
R C 0.04
E C 0.76
S C 0.89
D C 0.89
S C 0.88
V C 0.74
P C 0.72
A C 0.69
K C 0.44
S C 0.10
Y C 0.19
G C 0.47
L C 0.28
G C 0.12
R C 0.44
P C 0.84
W C 0.72
H C 0.84
P C 0.87
T C 0.76
T C 0.91
T C 0.69
F C 0.84
S C 0.85
D C 0.83
G C 0.75
R C 0.88
Y C 0.85
A C 0.63
D C 0.89
P C 0.68
N C 0.64
A C 0.56
I E 0.07
G E 0.49
Q E 0.17
T E 0.86
V E 0.92
F E 0.90
L E 0.69
N C 0.65
T C 0.64
S E 0.56
M E 0.71
D H 0.23
N H 0.09
H H 0.17
I H 0.09
Y E 0.18
G E 0.07
W H 0.24
D H 0.72
K H 0.46
M C 0.10
S C 0.88
G C 0.89
K C 0.92
D C 0.86
K C 0.83
N C 0.69
G C 0.29
N C 0.18
T E 0.11
I E 0.15
W E 0.72
F E 0.60
N C 0.69
P C 0.91
E C 0.85
D C 0.68
S C 0.71
R E 0.85
F E 0.91
F E 0.92
E E 0.93
Y E 0.63
K C 0.21
S C 0.86
Y C 0.87
G C 0.90
A C 0.79
G C 0.87
A C 0.82
A C 0.61
V C 0.64
S C 0.60
K C 0.90
D C 0.70
R C 0.49
R C 0.84
Q C 0.87
L C 0.64
T C 0.94
D H 0.80
A H 0.85
Q H 0.79
A H 0.52
A H 0.12
E C 0.29
Y C 0.03
T H 0.13
Q H 0.33
S H 0.53
K H 0.60
V H 0.51
L H 0.35
G H 0.02
D C 0.65
W C 0.39
T C 0.56
P C 0.87
T C 0.92
L C 0.90
P C 0.96
END

