
PFRMAT AL
TARGET T0100
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1rmg
A  25    T  18
T  26    K  19
T  27    T  20
Y  28    C  21
N  29    N  22
A  30    I  23
V  31    L  24
V  32    S  25
S  33    Y  26
K  34    G  27
S  35    A  28
S  36    V  29
S  37    A  30
D  38    D  31
G  39    N  32
K  40    S  33
T  41    T  34
F  42    D  35
K  43    P  38
T  44    A  39
I  45    I  40
A  46    T  41
D  47    S  42
A  48    A  43
I  49    W  44
A  50    A  45
S  51    A  46
A  52    C  47
P  53    K  48
A  54    S  49
G  55    G  50
S  56    G  51
T  57    L  52
I  61    V  53
L  62    Y  54
I  63    I  55
K  64    P  56
N  65    S  57
G  66    G  58
V  67    N  59
Y  68    Y  60
N  69    A  61
E  70    L  62
R  71    N  63
L  72    T  64
T  73    W  65
I  74    V  66
T  75    T  67
R  76    G  71
N  77    S  72
N  78    A  73
L  79    T  74
H  80    A  75
L  81    I  76
K  82    Q  77
G  83    L  78
E  84    D  79
S  85    G  80
R  86    I  81
N  87    I  82
G  88    Y  83
A  89    R  84
V  90    T  85
I  91    G  86
A  92    T  87
A  93    A  88
A  94    S  89
G 111    G 126
S 112    A 127
S 113    R 128
T 114    I 129
I 115    L 130
T 116    R 131
I 117    L 132
S 118    T 133
A 119    V 135
K 120    T 136
D 121    H 137
F 122    F 138
S 123    S 139
A 124    V 140
Q 125    H 141
S 126    D 142
L 127    I 143
T 128    I 144
I 129    L 145
R 130    V 146
N 131    D 147
D 132    A 148
F 133    P 149
D 134    A 150
F 135    F 151
D 143    D 180
S 144    V 181
D 145    W 182
S 146    G 183
S 147    S 184
K 148    N 185
I 149    I 186
K 150    W 187
D 151    V 188
T 152    H 189
Q 153    D 190
A 154    V 191
Y 158    E 192
V 159    V 193
T 160    T 194
K 161    N 195
S 162    K 196
G 163    D 197
D 164    E 198
R 165    C 199
A 166    V 200
Y 167    T 201
F 168    V 202
K 169    K 203
D 170    S 204
V 171    P 205
S 172    A 206
L 173    N 207
V 174    N 208
G 175    I 209
Y 176    L 210
Q 177    V 211
D 178    E 212
T 179    S 213
L 180    I 214
Y 181    Y 215
V 182    C 216
S 183    N 217
G 184    W 218
G 185    S 219
R 186    G 220
S 187    G 221
F 188    C 222
F 189    A 223
S 190    S 226
D 191    L 227
C 192    G 228
R 193    A 229
I 194    D 230
S 195    T 231
G 196    D 232
T 197    V 233
V 198    T 234
D 199    D 235
F 200    I 236
I 201    V 237
F 202    Y 238
G 203    R 239
D 204    N 240
G 205    V 241
T 206    Y 242
F 209    T 243
N 210    W 244
N 211    S 245
C 212    S 246
D 213    N 247
L 214    Q 248
V 215    M 249
S 216    Y 250
R 217    M 251
Y 218    I 252
R 219    K 253
A 220    S 254
D 221    N 255
V 222    G 256
K 223    G 257
S 224    S 258
G 225    G 259
N 226    T 260
V 227    V 261
S 228    S 262
G 229    N 263
Y 230    V 264
L 231    L 265
T 232    L 266
A 233    E 267
P 234    N 268
S 235    F 269
T 236    I 270
N 237    G 271
I 238    H 272
N 239    G 273
Q 240    N 274
K 241    A 275
Y 242    Y 276
G 243    S 277
L 244    L 278
V 245    D 279
I 246    I 280
TER
END


