
PFRMAT AL
TARGET T0097
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1quu_A
G 151    L   9
Q 152    E  10
D 153    R  11
G 154    L  12
L 155    E  13
S 156    H  14
G 157    L  15
V 158    A  16
K 159    E  17
E 160    K  18
T 161    F  19
D 162    R  20
K 163    Q  21
K 164    K  22
W 165    A  23
A 166    S  24
I 172    T  25
M 173    H  26
G 174    E  27
K 175    T  28
I 176    W  29
L 177    A  30
D 178    Y  31
Q 179    G  32
G 180    K  33
E 181    E  34
D 182    Q  35
F 183    I  36
P 184    L  37
A 185    L  38
S 186    Q  39
E 187    K  40
L 188    D  41
A 189    Y  42
R 190    E  43
I 191    S  44
S 192    A  45
K 193    S  46
L 194    L  47
I 195    T  48
E 196    E  49
N 197    V  50
K 198    R  51
M 199    A  52
S 200    L  53
E 201    L  54
G 202    R  55
K 203    K  56
K 204    H  57
E 205    E  58
E 206    A  59
L 207    F  60
Q 208    E  61
R 209    S  62
S 210    D  63
L 211    L  64
N 212    A  65
I 213    A  66
L 214    Q  73
T 215    I  74
A 216    A  75
F 217    A  76
R 218    I  77
K 219    A  78
K 220    Q  79
G 221    E  80
A 222    L  81
E 223    N  82
K 224    E  83
TER
END


