
PFRMAT AL
TARGET T0097
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1brw_A
R 141    M   1
E 142    R   2
A 143    M   3
R 144    V   4
Q 145    D   5
A 146    L   6
I 147    I   7
L 148    A   8
K 149    K   9
Q 150    K  10
Q 152    R  11
D 153    D  12
G 154    G  13
L 155    K  14
S 156    A  15
G 157    L  16
V 158    T  17
K 159    K  18
E 160    E  19
D 162    E  20
K 163    I  21
K 164    E  22
W 165    W  23
A 166    I  24
S 167    V  25
Q 168    R  26
Y 169    G  27
L 170    Y  28
M 173    T  29
G 174    N  30
K 175    G  31
I 176    D  32
L 177    I  33
D 178    P  34
Q 179    D  35
G 180    Y  36
E 181    Q  37
D 182    M  38
F 183    S  39
P 184    A  40
A 185    L  41
S 186    A  42
E 187    M  43
L 188    A  44
A 189    I  45
R 190    Y  46
I 191    F  47
S 192    R  48
K 193    G  49
L 194    M  50
I 195    T  51
E 196    E  52
N 197    E  53
K 198    E  54
M 199    T  55
S 200    A  56
TER
END


