
PFRMAT AL
TARGET T0095
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.87 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1qsaa1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1qsa_A
D 388     D   140
H 389     K   141
V 390     L   142
S 391     F   143
D 392     S   144
S 393     V   145
F 394     W   146
L 395     R   147
E 396     A   148
T 397     S   149
N 398     L   155
V 399     A   156
P 400     Y   157
L 401     L   158
L 402     E   159
V 403     R   160
L 404     I   161
I 405     R   162
E 406     L   163
A 407     A   164
A 408     M   165
K 409     K   166
N 410     A   167
G 411     G   168
N 412     N   169
E 413     T   170
K 414     G   171
E 415     L   172
V 416     V   173
K 417     T   174
E 418     V   175
Y 419     L   176
A 420     A   177
Q 421     G   178
V 422     Q   179
F 423     M   180
R 424     P   181
N 428     A   182
K 429     D   183
L 430     Y   184
I 431     Q   185
E 432     T   186
V 433     I   187
A 434     A   188
N 435     S   189
L 436     A   190
A 437     I   191
C 438     I   192
S 439     S   193
I 440     L   194
S 441     A   195
N 442     N   196
N 443     N   197
E 444     P   198
E 445     N   199
G 446     T   200
V 447     V   201
K 448     L   202
L 449     T   203
V 450     F   204
R 451     A   205
M 452     R   206
S 453     T   207
A 454     T   208
S 455     G   209
L 457     A   210
E 458     T   211
A 459     D   212
L 460     F   213
C 461     T   214
P 462     R   215
Q 463     Q   216
V 464     M   217
I 465     A   218
N 466     A   219
A 467     V   220
A 468     A   221
L 469     F   222
A 470     A   223
L 471     S   224
A 472     V   225
A 473     A   226
K 474     R   227
P 475     Q   228
Q 476     D   229
S 477     A   230
K 478     E   231
L 479     N   232
A 480     A   233
Q 481     R   234
E 482     L   235
N 483     M   236
M 484     I   237
D 485     P   238
L 486     S   239
F 487     L   240
K 488     A   241
E 489     Q   242
Q 490     A   243
W 491     N   247
E 492     E   248
K 493     D   249
Q 494     Q   250
V 495     I   251
R 496     Q   252
V 497     E   253
L 498     L   254
T 499     R   255
D 500     D   256
A 501     I   257
V 502     V   258
D 503     A   259
D 504     Q   271
I 505     A   272
T 506     K   273
S 507     W   274
I 508     R   275
D 509     D   276
D 510     D   277
F 511     A   278
L 512     I   279
A 513     M   280
V 514     R   281
S 515     S   282
E 516     Q   283
N 517     S   284
H 518     T   285
I 519     S   286
L 520     L   287
E 521     I   288
D 522     E   289
N 524     R   290
K 525     R   291
C 526     V   292
V 527     R   293
I 528     M   294
A 529     A   295
L 530     L   296
Q 531     G   297
E 532     T   298
K 533     G   299
D 534     D   300
V 535     R   301
D 536     R   302
G 537     G   303
L 538     L   304
D 539     N   305
R 540     T   306
T 541     W   307
A 542     L   308
G 543     A   309
A 544     R   310
I 545     L   311
R 546     P   312
G 547     M   313
R 548     E   314
A 549     A   315
A 550     K   316
R 551     E   317
V 552     K   318
I 553     D   319
H 554     E   320
V 555     W   321
V 556     R   322
T 557     Y   323
S 558     W   324
E 559     Q   325
M 560     A   326
D 561     D   327
N 562     L   328
Y 563     L   329
E 564     L   330
P 565     E   331
T 569     R   332
E 570     G   333
K 571     R   334
V 572     E   335
L 573     A   336
E 574     E   337
A 575     A   338
T 576     K   339
K 577     E   340
L 578     I   341
L 579     L   342
S 580     H   343
N 581     Q   344
T 582     L   345
V 583     M   346
M 584     Q   347
P 585     Q   348
R 586     R   349
F 587     G   350
T 588     F   351
E 589     Y   352
Q 590     P   353
V 591     M   354
E 592     V   355
A 593     A   356
A 594     A   357
V 595     Q   358
E 596     R   359
A 597     I   360
L 598     G   361
S 599     E   362
S 600     E   363
D 601     Y   364
P 602     E   365
A 603     L   366
Q 604     K   367
P 605     I   368
M 606     D   369
D 607     K   370
E 608     A   371
N 609     P   372
E 610     Q   373
F 611     N   374
I 612     V   375
D 613     D   376
A 614     S   377
S 615     A   378
R 616     L   379
L 617     T   380
V 618     Q   381
Y 619     G   382
D 620     P   383
G 621     E   384
I 622     M   385
R 623     A   386
D 624     R   387
I 625     V   388
R 626     R   389
K 627     E   390
A 628     L   391
V 629     M   392
L 630     Y   393
M 631     W   394
TER
END

