
PFRMAT AL
TARGET T0094
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  1
PARENT 5gcn_A
L 14 I 9
P 15 L 10
D 16 T 11
E 17 N 12
E 18 D 13
S 19 G 14
E 20 T 15
P 21 H 16
R 22 R 17
F 23 N 18
K 24 M 19
K 25 K 20
L 26 L 21
M 27 L 22
E 28 I 23
A 29 D 24
L 30 L 25
R 31 K 26
S 32 N 27
E 33 I 28
F 34 F 29
T 35 S 30
R 38 R 31
F 39 Q 32
V 40 L 33
P 41 P 34
H 42 K 35
V 43 M 36
T 44 P 37
V 45 K 38
A 46 E 39
V 47 Y 40
S 48 I 41
A 49 V 42
Y 50 K 43
L 51 L 44
T 52 V 45
A 53 F 46
D 54 D 47
E 55 R 48
A 56 H 49
K 57 H 50
K 58 E 51
M 59 S 52
F 60 M 53
E 61 V 54
S 62 I 55
A 63 L 56
C 64 K 57
D 65 N 58
G 66 K 59
L 67 Q 60
K 68 K 61
A 69 V 62
Y 70 I 63
T 71 G 64
A 72 G 65
T 73 I 66
V 74 C 67
D 75 F 68
R 76 R 69
V 77 Q 70
S 78 Y 71
T 79 K 72
G 80 P 73
T 81 Q 74
F 82 R 75
F 83 F 76
F 84 A 77
Q 85 E 78
C 86 V 79
V 87 A 80
F 88 F 81
L 89 L 82
L 90 A 83
L 91 V 84
Q 92 T 85
T 93 A 86
T 94 N 87
P 95 E 88
E 96 Q 89
V 97 V 90
M 98 R 91
E 99 G 92
A 100 Y 93
G 101 G 94
E 102 T 95
H 103 R 96
C 104 L 97
K 105 M 98
N 106 N 99
H 107 K 100
F 108 F 101
N 109 K 102
C 110 D 103
S 111 H 104
T 112 M 105
T 113 Q 106
T 114 K 107
P 115 Q 108
Y 116 N 109
M 117 I 110
P 118 E 111
H 119 Y 112
L 120 L 113
L 122 L 114
L 123 T 115
Y 124 Y 116
A 125 A 117
E 126 D 118
L 127 N 119
T 128 F 120
E 129 A 121
E 130 I 122
E 131 G 123
K 132 K 126
K 133 K 127
N 134 Q 128
A 135 G 129
Q 136 F 130
E 137 T 131
K 138 K 132
A 139 E 133
Y 140 H 134
T 141 R 135
L 142 M 136
D 143 P 137
S 144 Q 138
S 145 E 139
R 155 K 140
L 156 W 141
A 157 K 142
L 158 G 143
C 159 Y 144
K 160 I 145
T 161 K 146
D 162 D 147
T 163 Y 148
E 164 D 149
D 165 G 150
K 166 G 151
T 167 T 152
L 168 L 153
E 169 M 154
T 170 E 155
C 177 C 156
N 178 Y 157
L 179 I 158
N 180 H 159
P 181 P 160
TER
END

