
PFRMAT AL
TARGET T0094
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 2vil
V  74    V  31
D  75    P  32
R  76    T  33
V  77    K  34
S  78    S  35
T  79    Y  36
G  80    G  37
T  81    N  38
F  82    F  39
F  83    Y  40
F  84    E  41
Q  85    G  42
C  86    D  43
V  87    C  44
F  88    Y  45
L  89    V  46
L  90    L  47
L  91    L  48
Q  92    S  49
T  93    T  50
T  94    R  51
P  95    K  52
E  96    T  53
E 102    G  54
H 103    S  55
C 104    G  56
K 105    F  57
N 106    S  58
H 107    Y  59
F 108    N  60
T 114    I  61
P 115    H  62
Y 116    Y  63
M 117    W  64
L 123    L  65
Y 124    G  66
A 125    K  67
E 126    N  68
L 127    S  69
T 128    S  70
E 129    Q  71
E 130    D  72
E 131    E  73
K 132    Q  74
K 133    G  75
N 134    A  76
A 135    A  77
Q 136    A  78
E 137    I  79
K 138    Y  80
A 139    T  81
Y 140    T  82
T 141    Q  83
L 142    M  84
D 143    D  85
S 144    E  86
S 145    Y  87
L 146    L  88
D 147    G  89
G 148    S  90
L 149    V  91
S 150    A  92
TER
END

