
PFRMAT AL
TARGET T0094
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 2jhb_A
L  14    V   7
P  15    P   8
D  16    D   9
E  17    Q  10
E  18    E  15
S  19    N  16
E  20    E  17
P  21    E  18
R  22    F  19
F  23    F  20
K  24    R  21
K  25    K  22
L  26    L  23
M  27    S  24
E  28    R  25
A  29    E  26
L  30    C  27
R  31    E  28
S  32    I  29
E  33    K  30
F  34    Y  31
T  35    T  32
G  36    G  33
P  37    F  34
R  38    R  35
F  39    D  36
V  40    R  37
P  41    P  38
H  42    H  39
D  54    E  40
E  55    E  41
A  56    R  42
K  57    Q  43
K  58    T  44
M  59    R  45
F  60    F  46
E  61    Q  47
S  62    N  48
A  63    A  49
C  64    C  50
D  65    D  52
G  66    G  53
L  67    R  54
K  68    S  55
A  69    A  58
Y  70    F  59
T  71    V  60
A  72    A  61
T  73    T  62
V  74    G  63
D  75    T  64
R  76    N  65
V  77    L  66
S  78    S  67
T  79    L  68
G  80    Q  69
T  81    F  70
F  82    F  71
F  83    P  72
TER
END

