
PFRMAT AL
TARGET T0094
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1a48
L  14    L  89
P  15    P  90
D  16    A  91
E  17    K  92
E  18    L  93
S  19    S  94
E  20    E  95
P  21    P  96
R  22    K  97
F  23    Y  98
K  24    K  99
K  25    T 100
L  26    Q 101
M  27    L 102
E  28    E 103
A  29    D 104
L  30    R 105
R  31    S 106
S  32    L 107
E  33    L 108
F  34    V 109
T  35    H 110
G  36    K 111
P  37    H 112
R  38    K 113
F  39    L 114
V  40    I 115
P  41    P 116
V  43    L 117
T  44    E 118
V  45    V 119
A  46    I 120
V  47    V 121
S  48    R 122
A  49    G 123
Y  50    Y 124
L  51    I 125
T  52    T 126
A  53    G 127
D  54    S 128
E  55    A 129
A  56    W 130
K  57    K 131
K  58    E 132
M  59    Y 133
F  60    V 134
E  61    K 135
S  62    T 136
A  63    G 137
C  64    T 138
D  65    H 140
G  66    G 141
L  67    L 142
K  68    K 143
A  69    Q 144
Y  70    P 145
T  71    Q 146
A  72    G 147
V  77    L 148
S  78    K 149
T  79    E 150
G  80    S 151
T  81    Q 152
F  82    E 153
F  83    F 154
F  84    P 155
Q  85    E 156
C  86    P 157
V  87    I 158
F  88    F 159
T  94    T 160
P  95    P 161
E  96    S 162
V  97    T 163
C 104    D 171
K 105    E 172
N 106    N 173
H 107    I 174
F 108    S 175
N 109    P 176
C 110    A 177
S 111    Q 178
T 112    A 179
T 113    A 180
T 114    E 181
P 115    L 182
Y 116    V 183
M 117    G 184
P 118    E 185
H 119    D 186
L 120    L 187
S 121    S 188
L 122    R 189
L 123    R 190
Y 124    V 191
A 125    A 192
E 126    E 193
L 127    L 194
T 128    A 195
E 129    S 200
E 130    K 201
E 131    C 202
K 132    K 203
K 133    D 204
N 134    Y 205
A 135    A 206
Q 136    K 207
E 137    E 208
K 138    K 209
A 139    G 210
Y 140    I 211
T 141    I 212
L 142    I 213
D 143    D 215
S 144    T 216
S 145    K 217
L 146    F 218
D 147    E 219
G 148    G 221
TER
END

