
PFRMAT AL
TARGET T0093
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1coz_A
R  20    K  46
L  21    K  47
C  22    A  48
A  23    Y  49
N  24    H  50
T  25    S  51
G  26    Y  52
F  27    E  53
R  28    H  54
L  29    R  55
H  30    K  56
L  31    L  57
I  32    I  58
E  33    L  59
P  34    E  60
L  35    T  61
G  36    I  62
F  37    R  63
T  38    Y  64
W  39    V  65
D  40    D  66
D  41    E  67
K  42    V  68
R  43    I  69
R  45    P  70
R  46    E  71
S  47    K  72
G  48    N  73
L  49    W  74
D  50    E  75
Y  51    Q  76
H  52    K  77
E  53    K  78
F  54    Q  79
A  55    D  80
E  56    I  81
I  57    I  82
K  58    D  83
R  59    H  84
H  60    N  85
K  61    I  86
T  62    D  87
F  63    V  88
E  64    G  97
A  65    K  98
F  66    F  99
L  67    D 100
E  68    F 101
S  69    L 102
E  70    K 103
K  71    D 104
P  72    Q 105
K  73    C 106
R  74    E 107
L  75    V 108
F  76    V 109
A  77    Y 110
L  78    L 111
T  79    R 113
T  80    T 114
K  81    E 115
G  82    G 116
C  83    I 117
TER
END

