
PFRMAT AL
TARGET T0093
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1qor_A
I  18    A 157
I  19    C 158
R  20    Q 159
L  21    W 160
C  22    A 161
A  23    K 162
N  24    A 163
T  25    L 164
G  26    G 165
F  27    A 166
R  28    K 167
L  29    L 168
H  30    I 169
L  31    G 170
I  32    T 171
E  33    V 172
T  38    G 173
W  39    T 174
D  40    A 175
D  41    Q 176
K  42    K 177
R  43    A 178
L  44    Q 179
R  45    S 180
R  46    A 181
S  47    L 182
G  48    K 183
L  49    A 184
D  50    G 185
Y  51    A 186
H  52    W 187
E  53    Q 188
F  54    V 189
A  55    I 190
E  56    N 191
I  57    Y 192
K  58    R 193
R  59    E 194
H  60    E 195
K  61    D 196
T  62    L 197
F  63    V 198
E  64    E 199
A  65    R 200
F  66    L 201
L  67    K 202
E  68    E 203
S  69    I 204
E  70    T 205
K  71    G 206
P  72    G 207
K  73    K 208
R  74    K 209
L  75    V 210
F  76    R 211
A  77    V 212
L  78    V 213
T  79    Y 214
T  80    D 215
K  81    S 216
G  82    V 217
C  83    G 218
P  84    R 219
A  85    D 220
H  86    T 221
S  87    W 222
Q  88    E 223
V  89    R 224
K  90    S 225
F  91    L 226
K  92    D 227
L  93    C 228
G  94    G 233
D  95    L 234
Y  96    M 235
L  97    V 236
M  98    S 237
F  99    F 238
G 100    G 239
P 101    N 240
E 102    A 244
T 103    V 245
R 104    T 246
G 105    G 247
I 106    V 248
P 107    N 249
M 108    L 250
S 109    G 251
I 110    I 252
L 111    L 253
N 112    N 254
E 113    Q 255
M 114    K 256
P 115    G 257
M 116    S 258
E 117    L 259
Q 118    Y 260
K 119    V 261
I 120    T 262
R 121    R 263
TER
END

