
PFRMAT AL
TARGET T0093
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1oth_A
M    1 S 185
L    2 L 186
D    3 K 187
I    4 L 189
V    5 T 190
L    6 L 191
Y    7 S 192
E    8 W 193
P    9 I 194
E   10 G 195
I   11 D 196
P   12 G 197
Q   13 N 198
N   14 N 199
T   15 I 200
G   16 H 202
N   17 S 203
I   18 I 204
I   19 M 205
R   20 M 206
L   21 S 207
C   22 A 208
A   23 A 209
N   24 K 210
T   25 F 211
G   26 G 212
F   27 M 213
R   28 H 214
L   29 L 215
H   30 Q 216
L   31 A 217
I   32 A 218
E   33 T 219
P   34 P 220
L   35 K 221
G   36 G 222
F   37 Y 223
T   38 E 224
W   39 P 225
D   41 D 226
K   42 A 227
R   43 S 228
L   44 V 229
R   45 T 230
R   46 K 231
F   63 L 232
E   64 A 233
A   65 E 234
F   66 Q 235
L   67 Y 236
E   68 A 237
S   69 K 238
E   70 E 239
K   71 N 240
P   72 G 241
K   73 T 242
R   74 K 243
L   75 L 244
F   76 L 245
A   77 L 246
L   78 T 247
T   79 N 248
T   80 D 249
K   81 P 250
G   82 L 251
C   83 E 252
P   84 A 253
A   85 A 254
H   86 H 255
S   87 G 256
Q   88 G 257
V   89 N 258
K   90 V 259
F   91 L 260
K   92 I 261
L   93 T 262
G   94 D 263
D   95 T 264
Y   96 W 265
L   97 I 266
M   98 S 267
F   99 M 268
G  100 G 269
P  101 R 270
E  102 E 271
T  103 G 283
R  104 Y 284
G  105 Q 285
I  106 V 286
P  107 T 287
M  108 M 288
S  109 K 289
I  110 T 290
L  111 A 291
N  112 K 292
E  113 V 293
M  114 A 294
P  115 A 295
M  116 S 296
E  117 D 297
Q  118 F 300
K  119 L 301
I  120 H 302
R  121 C 303
I  122 L 304
P  123 P 305
M  124 R 306
T  125 K 307
A  126 P 308
N  127 S 318
S  128 P 319
R  129 R 320
S  130 S 321
M  131 L 322
N  132 N 329
L  133 R 330
S  134 K 331
N  135 W 332
S  136 T 333
V  137 I 334
A  138 M 335
V  139 A 336
T  140 V 337
V  141 M 338
Y  142 V 339
E  143 S 340
A  144 L 341
W  145 L 342
L  148 T 343
G  149 D 344
Y  150 Y 345
K  151 S 346
G  152 P 347
A  153 Q 348
V  154 L 349
N  155 Q 350
L  156 K 351
P  157 P 352
E  158 K 353
V  159 F 354
TER
END

