
PFRMAT AL
TARGET T0093
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD CASP4 submission
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD 
METHOD The rank 1 hit to an NAD(P)-binding Rossmann-fold domain
METHOD was chosen on the basis of the confidence of the hit (90%) by 
METHOD 3D-PSSM.
METHOD 
METHOD The alignment has been very slightly manually adjusted 
METHOD from the automated alignment by sliding the N-terminal 
METHOD predicted strand in the query to coincide with the 
METHOD N-terminal strand in the template.
METHOD Otherwise the alignment was largely unchanged from
METHOD that produced automatically by 3D-PSSM.
MODEL 1
PARENT 1qor_A
M    1 K 139
L    2 P 140
D    3 D 141
I    4 E 142
V    5 Q 143
L    6 F 144
Y    7 L 145
E    8 F 146
P    9 H 147
E   10 A 148
I   11 A 149
P   12 A 150
Q   13 G 151
N   14 G 152
T   15 V 153
G   16 G 154
N   17 L 155
I   18 I 156
I   19 A 157
R   20 C 158
L   21 Q 159
C   22 W 160
A   23 A 161
N   24 K 162
T   25 A 163
G   26 L 164
F   27 A 166
R   28 K 167
L   29 L 168
H   30 I 169
L   31 G 170
I   32 T 171
E   33 V 172
G   36 G 173
F   37 T 174
T   38 A 175
W   39 Q 176
D   40 K 177
D   41 A 178
K   42 Q 179
R   43 S 180
L   44 A 181
R   45 L 182
R   46 K 183
S   47 A 184
G   48 G 185
E   53 A 186
F   54 W 187
A   55 Q 188
E   56 V 189
I   57 I 190
K   58 N 191
R   59 Y 192
H   60 R 193
K   61 E 194
T   62 L 197
F   63 V 198
E   64 E 199
A   65 R 200
F   66 L 201
L   67 K 202
E   68 E 203
S   69 I 204
E   70 T 205
K   71 G 206
P   72 G 207
K   73 K 208
R   74 K 209
L   75 V 210
F   76 R 211
A   77 V 212
L   78 V 213
T   79 Y 214
T   80 D 215
K   81 S 216
G   82 V 217
C   83 G 218
P   84 R 219
A   85 D 220
H   86 T 221
S   87 W 222
Q   88 E 223
V   89 R 224
K   90 S 225
F   91 L 226
K   92 D 227
L   93 R 232
G   94 G 233
D   95 L 234
Y   96 M 235
L   97 V 236
M   98 S 237
F   99 F 238
G  100 G 239
P  101 N 240
E  102 S 241
T  103 V 245
R  104 T 246
G  105 G 247
I  106 V 248
P  107 N 249
M  108 L 250
S  109 G 251
I  110 I 252
L  111 L 253
N  112 N 254
E  113 Q 255
M  114 K 256
P  115 G 257
M  116 S 258
Q  118 L 259
K  119 Y 260
I  120 V 261
R  121 T 262
I  122 R 263
P  123 P 264
M  124 S 265
TER
END

