
PFRMAT SS
TARGET T0090
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
M E 0.44
L C 0.44
K C 0.67
P C 0.78
D C 0.78
N C 0.78
L C 0.67
P C 0.56
V C 0.56
T C 0.56
F C 0.67
G C 0.89
K C 0.78
N C 0.78
D C 0.67
V E 0.56
E E 0.56
I E 0.67
I E 0.56
A C 0.56
R C 0.56
E C 0.56
T C 0.56
L E 0.56
Y C 0.44
R C 0.67
G C 0.78
F C 0.78
F C 0.56
S E 0.67
L E 0.67
D E 0.56
L E 0.56
Y E 0.56
R E 0.56
F E 0.44
R C 0.44
H E 0.56
R E 0.56
L E 0.56
F C 0.67
N C 0.67
G C 0.78
Q C 0.78
M C 0.78
S C 0.78
H C 0.78
E C 0.67
V H 0.67
R H 0.56
R H 0.56
E H 0.56
I H 0.56
F H 0.56
E C 0.56
R C 0.67
G C 0.78
H C 0.78
A C 0.67
A E 0.78
V E 0.89
L E 1.00
L E 1.00
P E 1.00
F E 0.89
D E 0.78
P C 0.67
V C 0.89
R C 1.00
D C 1.00
E C 0.67
V E 0.89
V E 1.00
L E 1.00
I E 0.89
E E 0.67
Q C 0.56
I C 0.78
R C 0.78
I C 0.89
A C 0.56
A C 0.56
Y C 0.56
D C 0.67
T C 0.78
S C 0.89
E C 0.89
T C 0.89
P C 0.89
W C 0.78
L E 0.67
L E 0.56
E E 0.56
M E 0.56
V C 0.67
A C 0.78
G C 0.89
M E 0.78
I E 0.89
E C 0.89
E C 1.00
G C 1.00
E C 1.00
S C 0.89
V H 0.89
E H 1.00
D H 1.00
V H 1.00
A H 1.00
R H 1.00
R H 1.00
E H 1.00
A H 1.00
I H 1.00
E H 1.00
E H 0.89
A C 0.56
G C 1.00
L C 0.89
I C 0.67
V C 0.56
K H 0.56
R H 0.56
T H 0.56
K H 0.67
P H 0.56
V H 0.56
L H 0.56
S H 0.44
F C 0.56
L C 0.56
A C 0.78
S C 0.89
P C 0.89
G C 0.89
G C 0.89
T C 0.78
S C 0.89
E C 0.78
R C 0.56
S E 0.67
S E 0.78
I E 0.89
M E 0.89
V E 0.89
G H 0.56
E H 0.56
V H 0.56
D C 0.44
A C 0.44
T C 0.56
T C 0.67
A C 0.78
S C 0.78
G C 0.89
I C 0.89
H C 0.78
G C 0.78
L C 0.78
A C 0.78
D C 0.89
E C 0.67
N C 0.56
E H 0.56
D H 0.67
I H 0.67
R H 0.67
V E 0.78
H E 0.78
V E 0.78
V E 0.78
S C 0.78
R H 0.89
E H 0.89
Q H 0.89
A H 1.00
Y H 1.00
Q H 1.00
W H 1.00
V H 0.89
E H 0.89
E C 0.67
G C 0.89
K C 0.89
I C 0.56
D C 0.56
N C 0.56
A H 0.56
A H 0.67
S H 0.67
V H 0.78
I H 0.78
A H 0.78
L H 0.78
Q H 0.78
W H 0.78
L H 0.78
Q H 0.67
L H 0.78
H H 0.78
H H 0.78
Q H 0.78
A H 0.78
L H 0.78
K H 0.78
N H 0.78
E H 0.78
W H 0.67
A H 0.56
END










