
PFRMAT AL
TARGET T0090
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 2prd
R   35 A 1
F   36 N 2
R   37 L 3
H   38 K 4
R   39 S 5
L   40 L 6
F   41 P 7
N   42 V 8
G   43 G 9
Q   44 D 10
M   45 K 11
S   46 A 12
H   47 P 13
E   48 E 14
V   49 V 15
R   50 V 16
R   51 H 17
E   52 M 18
I   53 V 19
F   54 I 20
E   55 E 21
R   56 P 23
G   57 R 24
H   58 G 25
A   59 S 26
A   60 G 27
V   61 N 28
L   62 K 29
L   63 Y 30
P   64 E 31
F   65 Y 32
D   66 D 33
P   67 P 34
V   68 D 35
R   69 L 36
D   70 G 37
E   71 A 38
V   72 I 39
V   73 K 40
L   74 L 41
I   75 D 42
E   76 R 43
I   80 V 44
A   81 L 45
A   82 P 46
Y   83 G 47
D   84 A 48
T   85 Q 49
S   86 F 50
E   87 Y 51
T   88 P 52
P   89 G 53
W   90 D 54
L   91 Y 55
L   92 G 56
E   93 F 57
M   94 I 58
V   95 P 59
A   96 S 60
G   97 T 61
M   98 L 62
I   99 A 63
E  100 E 64
E  101 D 65
G  102 G 66
K  122 D 67
R  123 P 68
T  124 L 69
K  125 D 70
P  126 V 73
V  127 L 74
L  128 S 75
S  129 T 76
F  130 Y 77
L  131 P 78
A  132 L 79
S  133 L 80
P  134 P 81
G  135 G 82
G  136 V 83
T  137 V 84
S  138 V 85
E  139 E 86
R  140 V 87
S  141 R 88
S  142 V 89
I  143 V 90
M  144 L 93
V  145 L 94
G  146 M 95
E  147 E 96
V  148 D 97
D  149 E 98
A  150 K 99
T  151 G 100
T  152 D 102
A  153 A 103
S  154 K 104
G  155 V 105
I  156 I 106
H  157 G 107
G  158 V 108
L  159 V 109
A  160 A 110
D  161 E 111
E  162 D 112
N  163 D 116
E  164 H 117
D  165 I 118
I  166 Q 119
R  167 D 120
V  168 I 121
H  169 G 122
V  170 D 123
V  171 V 124
S  172 P 125
R  173 K 129
E  174 Q 130
Q  175 E 131
A  176 I 132
Y  177 Q 133
Q  178 H 134
W  179 F 135
V  180 F 136
E  181 E 137
E  182 T 138
G  183 Y 139
K  184 K 140
I  185 A 141
D  186 L 142
N  187 E 143
A  188 A 144
A  189 K 145
S  190 R 158
V  191 K 159
I  192 A 160
A  193 A 161
L  194 L 162
Q  195 E 163
W  196 E 164
L  197 V 165
Q  198 R 166
L  199 A 167
H  200 C 168
H  201 I 169
Q  202 A 170
A  203 R 171
L  204 Y 172
K  205 K 173
N  206 G 174
TER
END

