
PFRMAT SS
TARGET T0089
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.96
I E 0.02
D E 0.23
L C 0.14
S C 0.09
K C 0.13
T C 0.79
V C 0.54
F E 0.25
Y E 0.85
T E 0.95
S E 0.94
I E 0.94
D E 0.68
I C 0.16
G C 0.75
S C 0.81
R C 0.43
Y C 0.03
I E 0.72
K E 0.89
G E 0.92
L E 0.94
V E 0.93
L E 0.78
G C 0.13
K C 0.41
R C 0.75
D C 0.93
Q C 0.89
E E 0.62
W E 0.91
E E 0.92
A E 0.95
L E 0.91
A E 0.77
F E 0.27
S E 0.22
S E 0.15
V C 0.41
K C 0.70
S C 0.63
R C 0.43
G C 0.35
L C 0.26
D C 0.40
E C 0.62
G C 0.01
E E 0.56
I E 0.77
K E 0.66
D C 0.22
A H 0.45
I H 0.74
A H 0.82
F H 0.83
K H 0.90
E H 0.95
S H 0.95
V H 0.96
N H 0.97
T H 0.96
L H 0.94
L H 0.90
K H 0.85
E H 0.89
L H 0.87
E H 0.88
E H 0.85
Q H 0.69
L C 0.12
Q C 0.89
K C 0.84
S C 0.60
L C 0.02
R E 0.56
S E 0.71
D E 0.69
F E 0.91
V E 0.95
I E 0.94
S E 0.75
F E 0.18
S C 0.19
S C 0.10
V E 0.33
S E 0.27
F E 0.07
E E 0.11
R E 0.25
E E 0.11
D C 0.23
T C 0.07
V E 0.74
I E 0.86
E E 0.72
R E 0.87
D E 0.44
F E 0.50
G C 0.64
E C 0.90
E C 0.86
K C 0.85
R C 0.51
S E 0.49
I E 0.44
T C 0.77
L H 0.92
D H 0.95
I H 0.95
L H 0.97
S H 0.95
E H 0.95
M H 0.97
Q H 0.95
S H 0.96
E H 0.95
A H 0.94
L H 0.91
E H 0.87
K H 0.49
L C 0.41
K C 0.90
E C 0.92
N C 0.73
G C 0.07
K H 0.03
T H 0.19
P E 0.06
L E 0.19
H E 0.67
I E 0.44
F E 0.38
S C 0.19
K C 0.19
R E 0.03
Y E 0.19
L E 0.53
L E 0.47
D C 0.41
D C 0.19
E H 0.16
R H 0.24
I H 0.06
V C 0.32
F C 0.51
N C 0.75
P H 0.15
L H 0.54
D H 0.35
M H 0.18
K C 0.02
A C 0.15
S C 0.20
K E 0.29
I E 0.14
A E 0.36
I E 0.59
E E 0.10
Y E 0.91
T E 0.97
S E 0.92
I E 0.91
V E 0.34
V C 0.24
P C 0.21
L H 0.51
K H 0.67
V H 0.82
Y H 0.89
E H 0.94
M H 0.96
F H 0.95
Y H 0.96
N H 0.96
F H 0.96
L H 0.95
Q H 0.93
D H 0.71
T C 0.11
V C 0.85
K C 0.93
S C 0.68
P E 0.11
F E 0.26
Q E 0.13
L E 0.44
K E 0.41
S E 0.09
S C 0.12
L H 0.46
V H 0.58
S H 0.59
T H 0.60
A H 0.64
E H 0.69
G H 0.60
V H 0.31
L C 0.63
T C 0.80
T C 0.64
P C 0.52
E C 0.59
K C 0.53
D C 0.49
R C 0.41
G C 0.33
V E 0.59
V E 0.92
V E 0.94
V E 0.95
N E 0.93
L E 0.36
G C 0.88
Y C 0.96
N C 0.89
F C 0.12
T E 0.74
G E 0.93
L E 0.93
I E 0.96
A E 0.97
Y E 0.93
K E 0.71
N C 0.59
G C 0.87
V C 0.16
P E 0.84
I E 0.96
K E 0.88
I E 0.51
S E 0.23
Y E 0.18
V E 0.20
P C 0.05
V C 0.43
G C 0.13
M H 0.55
K H 0.49
H H 0.78
V H 0.87
I H 0.84
K H 0.96
D H 0.96
V H 0.95
S H 0.95
A H 0.88
V H 0.89
L H 0.63
D C 0.72
T C 0.91
S C 0.95
F H 0.87
E H 0.88
E H 0.96
S H 0.93
E H 0.95
R H 0.96
L H 0.96
I H 0.88
I H 0.87
T H 0.70
H H 0.24
G C 0.17
N C 0.26
A C 0.28
V C 0.41
Y C 0.76
N C 0.71
D C 0.50
L C 0.46
K C 0.48
E C 0.47
E C 0.34
E E 0.31
I E 0.44
Q E 0.43
Y E 0.03
R C 0.16
G C 0.10
L C 0.48
D C 0.82
G C 0.84
N C 0.83
T C 0.69
I C 0.23
K E 0.20
T E 0.37
T E 0.18
T C 0.74
A H 0.89
K H 0.94
K H 0.94
L H 0.95
S H 0.94
V H 0.93
I H 0.95
I H 0.89
H H 0.95
A H 0.95
R H 0.93
L H 0.93
R H 0.96
E H 0.94
I H 0.94
M H 0.95
S H 0.96
K H 0.93
S H 0.95
K H 0.96
K H 0.96
F H 0.95
F H 0.95
R H 0.95
E H 0.94
V H 0.94
E H 0.92
A H 0.83
K H 0.65
I H 0.48
V H 0.42
E H 0.45
E H 0.28
G C 0.22
E C 0.23
I C 0.23
G C 0.50
I C 0.74
P C 0.85
G C 0.88
G C 0.80
V E 0.81
V E 0.93
L E 0.90
T E 0.65
G C 0.85
G H 0.63
G H 0.47
A H 0.26
K H 0.19
I H 0.65
P H 0.79
R H 0.87
I H 0.96
N H 0.96
E H 0.95
L H 0.96
A H 0.96
T H 0.96
E H 0.93
V H 0.81
F H 0.39
K C 0.75
S C 0.96
P C 0.74
V E 0.55
R E 0.90
T E 0.84
G E 0.69
C E 0.58
Y E 0.42
A E 0.03
N C 0.37
S C 0.29
D C 0.12
R C 0.17
P C 0.38
S C 0.78
I C 0.48
I C 0.40
N C 0.78
A C 0.09
D C 0.05
E H 0.63
V H 0.68
A H 0.01
N C 0.42
D C 0.90
P C 0.59
S C 0.10
F H 0.65
A H 0.90
A H 0.94
A H 0.91
F H 0.89
G H 0.92
N H 0.91
V H 0.83
F H 0.65
A H 0.50
V H 0.32
S H 0.11
E C 0.09
N C 0.38
P C 0.44
Y C 0.32
E C 0.33
E C 0.34
T C 0.33
P C 0.22
V C 0.22
K C 0.20
S C 0.21
E C 0.34
N C 0.47
P H 0.41
L H 0.80
K H 0.87
K H 0.91
I H 0.94
F H 0.95
R H 0.96
L H 0.97
F H 0.97
K H 0.92
E H 0.83
L H 0.66
M C 0.17
E C 0.98
END

