
PFRMAT AL
TARGET T0087
AUTHOR 8734-6605-4366
METHOD Main features of the approach:
METHOD 1. Threading in an external energy field of 'the template results
METHOD    in an alignment of a target sequence on the template.
METHOD    The energy of the obtainedstructure is evaluated using
METHOD    phenomelogical potentials applied to Ca and Cb atoms.
METHOD 2. Averaging over homologs is used in energy calculations.
METHOD 3. "Fragmentation" gapless threading is used for the final
METHOD    selection of predictions
MODEL  2
PARENT 1qgu_D
M   1    Y   50
S   2    E   51
K   3    A   52
I   4    L   53
L   5    N   54
V   6    F   55
F   7    R   56
G   8    R   57
H   9    E   58
Q  10    A   59
N  11    L   60
P  12    T   61
D  13    V   62
S  14    D   63
D  15    P   64
A  16    A   65
I  17    K   66
G  18    A   67
S  19    C   68
S  20    Q   69
M  21    P   70
A  22    L   71
Y  23    G   72
A  24    A   73
Y  25    V   74
L  26    L   75
K  27    C   76
R  28    S   77
Q  29    L   78
L  30    G   79
G  31    F   80
V  32    A   81
D  33    N   82
A  34    T   83
Q  35    L   84
A  36    P   85
V  37    Y   86
A  38    V   87
L  39    H   88
G  40    G   89
N  41    S   90
P  42    Q   91
N  43    G   92
F  48    D  119
G  54    L  131
P  58    Q  134
A  64    S  137
Q  65    A  138
A  66    L  139
E  67    Y  140
G  68    K  141
A  69    P  142
K  70    E  143
Q  71    I  144
V  72    I  145
I  73    A  146
L  74    V  147
T  75    S  148
D  76    T  149
H  77    T  150
N  78    C  151
E  79    M  152
F  80    A  153
Q  81    E  154
Q  82    V  155
S  83    I  156
I  84    G  157
A  85    D  158
D  86    D  159
I  87    L  160
R  88    Q  161
E  89    A  162
V  90    F  163
E  91    I  164
V  92    A  165
V  93    N  166
E  94    A  167
V  95    K  168
V  96    K  169
D  97    D  170
H  98    G  171
H  99    F  172
R 100    V  173
V 101    D  174
A 102    S  175
N 103    S  176
F 104    I  177
E 105    A  178
T 106    V  179
A 107    P  180
N 108    H  181
P 109    A  182
L 110    H  183
Y 111    T  184
M 112    P  185
R 113    S  186
L 114    F  187
E 115    I  188
P 116    G  189
V 117    S  190
G 118    H  191
S 119    V  192
A 120    T  193
S 121    G  194
S 122    W  195
I 123    D  196
V 124    N  197
Y 125    M  198
R 126    F  199
L 127    E  200
Y 128    G  201
K 129    F  202
E 130    A  203
N 131    K  204
G 132    T  205
V 133    F  206
E 138    K  296
I 139    S  297
A 140    K  298
G 141    K  299
V 142    V  300
M 143    V  301
L 144    Q  302
S 145    E  303
G 146    M  304
L 147    W  305
I 148    N  306
S 149    Q  307
D 150    P  308
K 155    S  329
S 156    Q  330
P 157    L  331
T 158    S  332
T 159    G  333
H 160    K  334
A 161    P  335
S 162    I  336
D 163    A  337
P 164    D  338
A 165    A  339
V 166    L  340
A 167    T  341
E 168    L  342
D 169    E  343
L 170    R  344
A 171    G  345
K 172    R  346
I 173    L  347
A 174    V  348
G 175    D  349
V 176    M  350
D 177    M  351
L 178    L  352
Q 179    D  353
E 180    S  354
Y 181    H  355
G 182    T  356
L 183    W  357
A 184    L  358
M 185    H  359
L 186    G  360
K 187    K  361
A 188    K  362
G 189    F  363
T 190    G  364
N 191    L  365
L 192    Y  366
A 193    G  367
S 194    D  368
K 195    P  369
T 196    D  370
A 197    F  371
A 198    V  372
Q 199    M  373
L 200    G  374
V 201    L  375
D 202    T  376
I 203    R  377
D 204    F  378
A 205    L  379
K 206    L  380
T 207    E  381
F 208    L  382
E 209    G  383
L 210    C  384
N 211    E  385
G 212    P  386
S 213    T  387
Q 214    V  388
V 215    I  389
R 216    L  390
V 217    S  391
A 218    H  392
Q 219    N  393
V 220    A  394
N 221    N  395
T 222    K  396
V 223    R  397
D 224    W  398
I 225    Q  399
N 226    K  400
E 227    A  401
V 228    M  402
L 229    N  403
E 230    K  404
R 231    M  405
Q 232    L  406
N 233    D  407
E 234    A  408
I 235    S  409
E 236    P  410
E 237    Y  411
A 238    G  412
I 239    R  413
K 240    D  414
A 241    S  415
S 242    E  416
S 249    F  446
D 250    I  447
F 251    Q  448
V 252    R  449
L 253    D  450
M 254    T  451
I 255    L  452
T 256    A  453
D 257    K  454
I 258    G  455
L 259    K  456
N 260    A  457
S 261    F  458
N 262    E  459
S 263    V  460
E 264    P  461
I 265    L  462
L 266    I  463
A 267    R  464
L 268    L  465
G 269    G  466
N 270    F  467
N 271    P  468
T 272    L  469
D 273    F  470
K 274    D  471
V 275    R  472
E 276    H  473
A 277    H  474
A 278    L  475
F 279    H  476
N 280    R  477
F 281    Q  478
T 282    T  479
L 283    T  480
K 284    W  481
N 285    G  482
N 286    Y  483
H 287    E  484
A 288    G  485
F 289    A  486
L 290    M  487
A 291    N  488
G 292    I  489
A 293    V  490
V 294    T  491
S 295    T  492
R 296    L  493
K 297    V  494
K 298    N  495
Q 299    A  496
V 300    V  497
V 301    L  498
P 302    E  499
Q 303    K  500
L 304    L  501
T 305    D  502
E 306    S  503
S 307    D  504
F 308    T  505
N 309    S  506
G 310    Q  507
TER
END


