
PFRMAT AL
TARGET T0087
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1d9b_A
I 123    I  33
V 124    V  34
Y 125    T  35
R 126    R  36
L 127    T  37
Y 128    I  39
K 129    R  40
E 130    E  41
N 131    R  42
G 132    H  43
V 133    I  44
A 134    A  45
I 135    A  46
P 136    P  47
K 137    N  48
E 138    E  49
I 139    T  50
A 140    V  51
G 141    S  52
V 142    T  53
M 143    M  54
L 144    M  65
S 145    A  66
G 146    G  67
L 147    I  68
I 148    E  69
S 149    K  70
D 150    D  71
T 151    Q  72
L 152    I  73
L 153    L  75
L 154    I  76
K 155    V  77
S 156    V  78
P 157    A  79
T 158    T  80
T 159    T  81
H 160    S  82
A 161    A  83
S 162    T  84
D 163    H  85
P 164    P  88
A 165    S  89
V 166    A  90
A 167    A  91
E 168    C  92
D 169    Q  93
L 170    I  94
A 171    Q  95
K 172    S  96
I 173    M  97
A 174    L  98
G 175    G  99
V 176    I 100
Y 181    F 106
G 182    D 107
L 183    V 108
A 184    A 109
M 185    A 110
L 186    A 111
K 187    C 112
A 188    A 113
G 189    G 114
T 190    F 115
N 191    T 116
L 192    Y 117
A 193    A 118
S 194    L 119
K 195    S 120
T 196    V 121
A 197    A 122
A 198    D 123
Q 199    Q 124
L 200    Y 125
V 201    V 126
D 202    K 127
I 203    S 128
D 204    G 129
A 205    A 130
K 206    V 131
T 207    K 132
F 208    Y 133
E 209    A 134
L 210    L 135
N 211    V 136
G 212    G 138
S 213    S 139
Q 214    D 140
V 215    V 141
R 216    L 142
V 217    A 143
A 218    R 144
Q 219    T 145
V 220    C 146
N 221    D 147
T 222    P 148
V 223    T 149
D 224    D 150
I 225    R 151
E 237    A 163
A 238    A 164
I 239    V 165
K 240    L 166
A 241    A 167
S 242    A 168
Q 243    S 169
A 244    E 170
A 245    E 171
N 246    P 172
G 247    G 173
Y 248    I 174
S 249    I 175
D 250    S 176
F 251    T 177
V 252    H 178
L 253    L 179
M 254    H 180
I 255    A 181
T 256    D 182
N 260    G 183
S 261    S 184
N 262    Y 185
S 263    G 186
E 264    E 187
I 265    L 188
L 266    L 189
A 267    T 190
L 268    L 191
G 269    P 192
N 270    N 193
T 272    A 194
D 273    D 195
K 274    R 196
V 275    V 197
E 276    E 200
A 277    N 201
A 278    S 202
F 279    I 203
N 280    H 204
F 281    L 205
T 282    T 206
L 283    M 207
K 284    A 208
N 285    G 209
N 286    N 210
H 287    E 211
A 288    V 212
F 289    F 213
L 290    K 214
A 291    V 215
A 293    A 216
V 294    V 217
S 295    T 218
R 296    E 219
K 297    L 220
K 298    A 221
Q 299    H 222
V 300    I 223
V 301    V 224
P 302    D 225
Q 303    E 226
L 304    T 227
T 305    L 228
TER
END


