
PFRMAT AL
TARGET T0087
AUTHOR 9052-6141-1222
REMARK ORF:T0087    (14- 271)  TEMPLATE: 2cmd    (9- 273)
REMARK ALIGNED LENGTH:  152 IDENTY:  23(15.1%)
METHOD COBLATH, or combination of PSI-BLAST and threading.  For each query,
METHOD fold recognition is attempted by both two-way PSI-BLAST and two-way
METHOD threading.  The Scoring function in the threading portion consists
METHOD of sequence profiles from PSI-BLAST and a 6x6 substitution matrix
METHOD between predicted query and actual template secondary structure and
METHOD solvent exposure.
MODEL  1
PARENT 2cmd
S  14    A 9
D  15    G 10
A  16    G 11
I  17    I 12
G  18    G 13
S  19    Q 14
S  20    A 15
M  21    L 16
A  22    A 17
Y  23    L 18
A  24    L 19
Y  25    L 20
L  26    K 21
K  27    T 22
R  28    Q 23
L  30    L 24
G  31    P 25
V  32    S 26
D  33    G 27
A  34    S 28
Q  35    E 29
A  36    L 30
V  37    S 31
A  38    L 32
L  39    Y 33
T  46    P 40
A  47    G 41
F  48    V 42
V  49    A 43
L  50    V 44
D  51    D 45
Y  52    L 46
F  53    S 47
G  54    H 48
I  55    I 49
Q  56    P 50
A  57    T 51
P  58    S 59
P  59    G 60
V  60    E 61
V  61    D 62
K  62    A 63
S  63    T 64
A  64    P 65
Q  65    A 66
A  66    L 67
E  67    E 68
G  68    G 69
A  69    A 70
K  70    D 71
T 106    C 109
A 107    P 110
N 108    K 111
P 109    A 112
L 110    C 113
Y 111    I 114
M 112    G 115
R 113    I 116
L 114    I 117
E 115    T 118
P 116    P 120
V 117    V 121
G 118    N 122
S 119    T 123
A 120    T 124
S 121    V 125
S 122    A 126
I 123    I 127
V 124    A 128
Y 125    A 129
R 126    E 130
L 127    V 131
Y 128    L 132
K 129    K 133
E 130    K 134
N 131    A 135
G 132    G 136
L 152    K 140
L 153    N 141
L 154    K 142
K 155    L 143
S 156    F 144
P 157    G 145
T 158    V 146
T 159    T 147
H 160    T 148
A 161    L 149
S 162    D 150
D 163    I 151
P 164    I 152
A 165    R 153
V 166    S 154
A 167    N 155
E 168    T 156
D 169    F 157
L 170    V 158
A 171    A 159
K 172    E 160
I 173    L 161
A 174    K 162
G 175    G 163
V 176    K 164
D 177    Q 165
L 178    P 166
Q 179    G 167
E 180    E 168
Y 181    V 169
V 223    S 222
D 224    A 223
I 225    T 224
N 226    L 225
E 227    S 226
V 228    M 227
L 229    G 228
E 230    Q 229
R 231    A 230
Q 232    A 231
N 233    A 232
E 234    R 233
I 235    F 234
E 236    G 235
E 237    L 236
A 238    S 237
I 239    L 238
K 240    V 239
A 241    R 240
S 242    A 241
Q 243    L 242
A 244    Q 243
S 249    E 250
D 250    C 251
F 251    A 252
V 252    Y 253
L 253    V 254
M 254    E 255
I 255    G 256
T 256    D 257
D 257    G 258
I 258    Q 259
L 259    Y 260
N 260    A 261
S 261    R 262
N 262    F 264
S 263    S 265
E 264    Q 266
I 265    P 267
L 266    L 268
A 267    L 269
L 268    L 270
G 269    G 271
N 270    K 272
N 271    N 273
TER
END

