
PFRMAT AL
TARGET T0087
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1b74_A
S    2 M 1
K    3 K 2
I    4 I 3
L    5 G 4
V    6 I 5
F    7 F 6
D   15 D 7
A   16 S 8
I   17 G 9
G   18 V 10
S   19 G 11
S   20 G 12
M   21 L 13
A   22 T 14
Y   23 V 15
A   24 L 16
Y   25 K 17
L   26 A 18
K   27 I 19
R   28 R 20
Q   29 N 21
L   30 R 22
G   31 Y 23
V   32 R 24
D   33 K 25
A   34 V 26
Q   35 D 27
A   36 I 28
V   37 V 29
A   38 Y 30
L   39 L 31
G   40 G 32
N   41 G 40
P   42 I 41
N   43 R 42
E   44 S 43
E   45 I 47
T   46 I 48
A   47 R 49
F   48 Y 50
V   49 S 51
L   50 L 52
D   51 E 53
Y   52 C 54
F   53 A 55
G   54 G 56
I   55 F 57
Q   65 L 58
A   66 K 59
E   67 D 60
G   68 K 61
A   69 G 62
K   70 V 63
Q   71 D 64
V   72 I 65
I   73 I 66
L   74 V 67
T   75 V 68
D   76 A 69
H   77 C 70
N   78 N 71
G  118 T 72
S  119 A 73
A  120 S 74
S  121 A 75
S  122 Y 76
I  123 A 77
V  124 L 78
Y  125 E 79
R  126 R 80
L  127 L 81
Y  128 K 82
K  129 K 83
E  130 E 84
N  131 I 85
G  132 N 86
V  133 V 87
A  134 P 88
I  135 I 93
P  136 E 94
K  137 P 95
E  138 G 96
I  139 V 97
A  140 K 98
G  141 E 99
V  142 A 100
M  143 L 101
L  144 K 108
S  145 I 109
G  146 G 110
L  147 V 111
I  148 I 112
S  149 G 113
H  160 T 114
A  161 P 115
S  162 A 116
D  163 T 117
P  164 V 118
A  165 K 119
V  166 A 122
A  167 Y 123
E  168 Q 124
D  169 R 125
L  170 K 126
A  171 L 127
K  172 E 128
I  173 E 129
A  174 G 130
G  175 G 131
V  176 A 132
D  177 D 133
L  178 V 159
Q  179 V 160
E  180 E 161
Y  181 H 162
G  182 Y 163
L  183 L 164
A  184 K 165
M  185 E 166
L  186 F 167
K  187 K 168
A  188 G 169
G  189 K 170
T  190 I 171
N  191 D 172
L  192 I 175
A  193 L 176
S  194 G 177
K  195 C 178
T  196 T 179
A  197 H 180
A  198 Y 181
Q  199 P 182
L  200 L 183
V  201 L 184
D  202 K 185
I  203 K 186
D  204 E 187
A  205 I 188
K  206 K 189
T  207 K 190
F  208 F 191
V  217 L 192
A  218 G 193
Q  219 D 194
V  220 A 195
N  221 E 196
T  222 V 197
V  223 V 198
D  224 D 199
I  225 S 200
N  226 S 201
E  227 E 202
V  228 A 203
I  235 L 204
E  236 S 205
E  237 L 206
A  238 S 207
I  239 L 208
K  240 H 209
A  241 N 210
S  242 F 211
Q  243 I 212
A  244 K 213
A  245 D 214
N  246 D 215
G  247 G 216
Y  248 S 217
S  249 S 218
D  250 S 219
F  251 L 220
V  252 E 221
L  253 L 222
M  254 F 223
I  255 F 224
T  256 T 225
D  257 D 226
L  259 L 227
N  260 S 228
S  261 P 229
N  262 N 230
S  263 L 231
E  264 Q 232
I  265 F 233
L  266 L 234
A  267 I 235
L  268 L 239
G  269 G 240
N  270 D 242
N  271 Y 243
T  272 P 244
D  273 V 245
K  274 K 246
V  275 L 247
E  276 A 248
A  277 E 249
A  278 G 250
F  279 F 252
TER
END

