
PFRMAT AL
TARGET T0087
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1emd
S    2 M 1
K    3 K 2
I    4 V 3
L    5 A 4
V    6 V 5
F    7 L 6
G    8 G 7
P   12 A 8
D   13 A 9
S   14 G 10
G   18 G 11
S   19 I 12
S   20 G 13
M   21 Q 14
A   22 A 15
Y   23 L 16
A   24 A 17
Y   25 L 18
L   26 L 19
K   27 L 20
R   28 K 21
Q   29 T 22
L   30 Q 23
G   31 L 24
V   32 P 25
D   33 S 26
A   34 G 27
Q   35 S 28
A   36 E 29
V   37 L 30
A   38 S 31
L   39 L 32
G   40 Y 33
N   41 D 34
P   42 I 35
N   43 A 36
E   44 P 37
E   45 V 38
T   46 T 39
A   47 P 40
F   48 G 41
V   49 V 42
L   50 A 43
D   51 D 45
Y   52 L 46
F   53 S 47
G   54 H 48
I   55 I 49
Q   56 P 50
A   57 T 51
P   58 A 52
P   59 V 53
V   60 K 54
V   61 I 55
K   62 K 56
S   63 G 57
A   64 F 58
Q   65 S 59
A   66 G 60
E   67 E 61
G   68 D 62
A   69 A 63
K   70 T 64
Q   71 D 71
V   72 V 72
I   73 V 73
L   74 L 74
T   75 I 75
D   76 S 76
H   77 A 77
N   78 G 78
E   79 V 79
F   80 R 80
Q   81 R 81
Q   82 K 82
S   83 P 83
I   84 G 84
A   85 M 85
D   86 D 86
I   87 R 87
R   88 D 89
E   89 L 90
V   90 F 91
E   91 N 92
V   92 V 93
V   93 A 95
E   94 G 96
V   95 I 97
V   96 V 98
D   97 K 99
H   98 N 100
H   99 L 101
R  100 V 102
V  101 Q 103
A  102 Q 104
N  103 A 106
F  104 K 107
E  105 T 108
T  106 C 109
A  107 P 110
N  108 K 111
P  109 A 112
L  110 C 113
Y  111 I 114
M  112 G 115
R  113 I 116
L  114 I 117
E  115 T 118
P  116 P 120
V  117 V 121
G  118 N 122
S  119 T 123
A  120 T 124
S  121 V 125
S  122 A 126
I  123 I 127
V  124 A 128
Y  125 A 129
R  126 E 130
L  127 V 131
Y  128 L 132
K  129 K 133
E  130 K 134
N  131 A 135
G  132 G 136
V  133 V 137
I  135 Y 138
P  136 D 139
K  137 K 140
E  138 N 141
L  152 K 142
L  153 L 143
L  154 F 144
P  157 G 145
T  158 V 146
T  159 T 147
H  160 T 148
A  161 L 149
S  162 D 150
D  163 I 151
P  164 I 152
A  165 R 153
V  166 S 154
A  167 N 155
E  168 T 156
D  169 F 157
L  170 V 158
A  171 A 159
K  172 E 160
I  173 L 161
A  174 K 162
G  175 G 163
V  176 K 164
D  177 Q 165
L  178 P 166
Q  179 G 167
E  180 E 168
Y  181 V 169
G  182 I 182
L  183 L 183
A  184 P 184
M  185 L 185
L  186 L 186
K  187 S 187
A  188 Q 188
G  189 V 189
T  190 P 190
N  191 G 191
L  192 V 192
S  194 S 193
K  195 F 194
T  196 T 195
A  197 E 196
A  198 Q 197
Q  199 E 198
L  200 V 199
V  201 A 200
D  202 D 201
I  203 L 202
D  204 T 203
A  205 K 204
K  206 R 205
T  207 I 206
F  208 Q 207
E  209 N 208
L  210 A 209
N  211 G 210
G  212 T 211
S  213 E 212
Q  214 V 213
V  215 V 214
R  216 E 215
V  217 A 216
A  218 K 217
Q  219 A 218
V  220 G 219
N  221 G 220
T  222 G 221
V  223 S 222
D  224 A 223
I  225 T 224
N  226 L 225
E  227 S 226
V  228 M 227
L  229 G 228
E  230 Q 229
R  231 A 230
Q  232 A 231
N  233 A 232
E  234 R 233
I  235 F 234
E  236 L 236
E  237 S 237
A  238 L 238
I  239 V 239
K  240 R 240
A  241 A 241
S  242 L 242
Q  243 Q 243
A  244 G 244
A  245 E 245
N  246 Q 246
G  247 G 247
Y  248 V 248
S  249 V 249
D  250 E 250
F  251 C 251
V  252 A 252
L  253 Y 253
M  254 V 254
I  255 E 255
T  256 G 256
D  257 D 257
I  258 G 258
L  259 Q 259
N  260 Y 260
S  261 A 261
N  262 R 262
S  263 S 265
E  264 Q 266
I  265 P 267
L  266 L 268
A  267 L 269
L  268 L 270
G  269 G 271
N  270 K 272
N  271 N 273
T  272 G 274
D  273 V 275
K  274 E 276
V  275 E 277
E  276 R 278
A  277 K 279
A  278 S 280
F  279 I 281
N  280 G 282
F  281 T 283
T  282 L 284
L  283 S 285
K  284 A 286
N  285 F 287
N  286 E 288
H  287 Q 289
A  288 N 290
F  289 A 291
L  290 L 292
A  291 E 293
G  292 G 294
A  293 M 295
V  294 L 296
S  295 D 297
R  296 T 298
K  297 K 300
K  298 K 301
Q  299 D 302
V  300 I 303
V  301 A 304
Q  303 L 305
L  304 G 306
T  305 Q 307
E  306 E 308
S  307 F 309
F  308 V 310
N  309 N 311
G  310 K 312
TER
END

